ICS Publications - CBML

Conferences (40)

    Papers in Proceedings (full-paper reviewed)

  1. Spanakis, M., Sfakianakis, S.G., Spanakis, E.G., Kallergi, G., & Sakkalis, V. (2018). PDCA: An Ehealth Service for the Management of Drug Interactions with Complementary and Alternative Medicines. IEEE Conference on Biomedical and Health Informatics (BHI) 2018, Las Vegas, Nevada, USA, 4-7 March 2018., 4-3-2018.
  2. Spanakis, M., Spanakis, E.G., Kondylakis, H., Sfakianakis, S.G., Genitsaridi , I., Sakkalis, V., Tsiknakis, M.N., & Marias, K. (2016). Addressing drug-drug and drug-food interactions through personalized empowerment services for healthcare. 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2016).
  3. Sfakianakis, S.G., Bei, E. S., Zervakis, M.E., & Kafetzopoulos, D. (2015). A Network-Based Approach to Enrich Gene Signatures for the Prediction of Breast Cancer Metastases. 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2015, Aug 2015, Milan, Italy. 2015 .
  4. Kallergi, G., Tsintari, V., Sfakianakis, S.G., Zervakis, M.E., Mavroudis, D., & Georgoulias , V. (2015). CXCR4 pathways in CTCs: from bioinformatics to immunophenotype. Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl).
  5. Kondylakis, H., Spanakis, E.G., Sfakianakis, S.G., Sakkalis, V., Tsiknakis, M.N., Marias, K., Xia, Z, Yu, H.Q., & Dong, F. (2015). Digital Patient: Personalized and Translational Data Management through the MyHealthAvatar EU Project. International Conference of the IEEE Engineering in Medicine and Biology Society of the IEEE Engineering in Medicine and Biology Society (EMBC), 2015, Milan, Italy.
  6. Chlis, N.K., Sfakianakis, S.G., Bei, E. S., Iliopoulou, D., Kafetzopoulos, D., & Zervakis, M.E. (2015). Searching for Significant Genes in Cancer Metastasis by Tissue Comparisons. 6th European Conference of the International Federation for Medical and Biological Engineering (pp. 594-597). Springer International Publishing. .
  7. Koumakis, L., Potamias, G.A., Sfakianakis, S.G., Moustakis, V.A., Zervakis, M.E., Graf, N., & Tsiknakis, M.N. (2014). miRNA based pathway analysis tool in nephroblastoma as a proof of principle for other cancer domains. IEEE 14th International Conference on Bioinformatics and Bioengineering (BIBE 2014). Boca Raton, USA.
  8. Sfakianaki, P., Koumakis, L., Sfakianakis, S.G., & Tsiknakis, M.N. (2014). Natural Language Processing for Biomedical Tools Discovery: A Feasibility Study and Preliminary Results. Business Information Systems: 17th International Conference, BIS 2014, Larnaca, Cyprus, May 22-23, 2014, (vol. 178, pp. 134).
  9. Marés, J., Shamardin, L., Weiler, G., Anguita, A., Sfakianakis, S.G., Neri, E., Zasada, S. J., Graf, N., & Coveney, P.V. (2014). p-medicine: A Medical Informatics Platform for Integrated Large Scale Heterogeneous Patient Data. AMIA Annual Symposium Proceedings, 2014, (pp. 872-881).
  10. Chlis, N.K., Sfakianakis, S.G., Bei, E. S., & Zervakis, M.E. (2013). A generic framework for the elicitation of stable and reliable gene expression signatures
  11. Tsiknakis, M.N., Sfakianakis, S.G., Marias, K., & Graf, N. (2012). A technical infrastructure to support personalized medicine. IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE), 2012.
  12. Sfakianakis, S.G., Sakkalis, V., Marias, K., Stamatakos, G.S., McKeever, S., Deisboeck, T., & Graf, N. (2012). An architecture for integrating cancer model repositories. 34th IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2012), San Diego, USA, August 28-September 1, 2012, (pp. 6628-6631).
  13. Sakkalis, V., Sfakianakis, S.G., & Marias, K. (2012). Bridging social media technologies and scientific research: an exemplary platform for VPH modellings. 3rd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2012), Workshop on Advances in Personalized Healthcare Services, Wearable Mobile Monitoring, and Social Media Pervasive Technologies (APHS 2012), Paris, France, November 21-23, 2012.
  14. Sfakianakis, S.G., Sakkalis, V., & Marias, K. (2012). Scientific Workflows to support in silico modeling in Cancer Research. 5th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation, Athens, Greece, October 22-23, 2012.
  15. Sakkalis, V., Sfakianakis, S.G., Marias, K., Stamatakos, G.S., Misichroni, F., Dionysiou, D.D., McKeever, S., Johnson, D., Deisboeck, T., & Graf, N. (2012). The TUMOR Project: Integrating Cancer Model Repositories for Supporting Predictive Oncology. 2nd Virtual Physiological Human Conference (VPH2012), London, UK, September 18-20, 2012, September 18-20.
  16. Martin, L., Anguita, A., Graf, N., Tsiknakis, M.N., Brochhausen, M., Ruping, S., Bucur, A., Sfakianakis, S.G., Sengstag, T., Buffa, F., & Stenzhorn, H. (2011). ACGT: Advancing Clinico-genomic trials on cancer - Four years of experience. MIE 2011, Oslo, Norway, August 2011, Stud Health Technol Inform..
  17. Marias, K., Stamatakos, G.S., Dionysiou, D.D., Sakkalis, V., Sfakianakis, S.G., & Tsiknakis, M.N. (2011). Computational Services for in silico Oncology: Experiences and Research Challenges. 7th GRACM International Congress on Computational Mechanics, Athens, Greece, 30 June – 2 July, 2011..
  18. Bucur, A., Ruping, S., Sengstag, T., Sfakianakis, S.G., Tsiknakis, M.N., & Wegener, D. (2011). The ACGT project in retrospect: Lessons learned and future outlook. Procedia Computer Science, 4:1119 - 1128, 2011. Proceedings of the International Conference on Computational Science, ICCS 2011, Japan, June 2011.
  19. Chronaki, C., Sfakianakis, S.G., Petrakis, Y., Charalambakis, G., Hinterbuchner, L., Radulescu, M., Mulrenin, B., Lüpkes, C., Eichelberg, M., Arbelo, E., Kabak, Y., Laleci, G., & Dogac, A. (2011). Tomorrow’s Integrated Care: Interoperability Testing in Guideline-driven Cardiac Telemonitoring. In Proceedigs of IHIC2011, Orlando Florida, May 2011.
  20. Tsiknakis, M.N., Sfakianakis, S.G., Zacharioudakis, G., & Koumakis, L. (2010). A framework supporting sharing and reuse of data and tools in translational cancer research: Lessons learned for VPH research. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (IARWISO), Athens, Greece, September 2010.
  21. Martin, L., Anguita, A., Graf, N., Tsiknakis, M.N., Brochhausen, M., Rueping, S., Bucur, A., Sfakianakis, S.G., & Stenzhorn, H. (2010). ACGT: Advancing Clinico-genomic trials on cancer – Four years of experience. AMIA 2010 Annual Symposium, Washington DC, Washington DC, 13-15 November 2010.
  22. Koumakis, L., Kanterakis, A., Potamias, G.A., Sfakianakis, S.G., Zacharioudakis, G., & Tsiknakis, M.N. (2010). Analyzing gene regulatory networks and gene expression profiles via scientific workflows. International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery, Chania, Greece, 7-9 July 2010.
  23. Sfakianakis, S.G., Zervakis, M.E., Tsiknakis, M.N., & Kafetzopoulos, D. (2010). Integration of Biological Knowledge in the Mixture-of-Gaussians Analysis of Genomic Clustering. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010), Corfu, Greece, Nov 2010.
  24. Kanterakis, A., Zacharioudakis, G., Koumakis, L., Potamias, G.A., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: A scenario for the coupling of molecular regulatory pathways and gene-expression profiles. 13th International Congress on Medical Informatics (MEDINFO 2010), South Africa, 12 - 15 of September 2010.
  25. Zacharioudakis, G., Koumakis, L., Sfakianakis, S.G., & Tsiknakis, M.N. (2009). A semantic infrastructure for the integration of bioinformatics services. 9th International Conference on Intelligent Systems Design and Applications, ISDA 2009, Pisa, 30 November 2009 through 2 December 2009 (pp. 367-372). (9780769538723 (ISBN)).
  26. Tsiknakis, M.N., Sfakianakis, S.G., Zacharioudakis, G., Koumakis, L., Kanterakis, A., Potamias, G.A., & Kafetzopoulos, D. (2009). A semantically aware platform for the authoring and secure enactment of bioinformatics workflows. 31st Annual International IEEE EMBS Conference (EMBC2009). September, 2-6, 2009, Hilton Minneapolis, Minnesota, USA.
  27. Sfakianakis, S.G., Graf, N., Hoppe, A., Rüping, S., Wegener, D., Koumakis, L., & Zacharioudakis, G. (2009). Building a system for advancing clinico-genomic trials on cancerProceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations(AIAI-2009), Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT), http://www.scientificcommons.org/48955097, April 23-25. Thessaloniki, Greece: Fraunhofer EPrints [http://publica.fraunhofer.de/eprints.har] (Germany).
  28. Koumakis, L., Sfakianakis, S.G., Moustakis, V.A., & Potamias, G.A. (2009). Discovery of Genotype-to-Phenotype Associations: A Grid-enabled Scientific Workflow SettingProceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations(AIAI-2009), Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT), http://www.scientificcommons.org/48955097, April 23-25. Thessaloniki, Greece: Fraunhofer EPrints [http://publica.fraunhofer.de/eprints.har] (Germany).
  29. Sfakianakis, S.G., Koumakis, L., Zacharioudakis, G., & Tsiknakis, M.N. (2009). Web-based authoring and secure enactment of bioinformatics workflows. 2009 Workshops at the Grid and Pervasive Computing Conference, GPC 2009, Geneva, 4 May 2009 through 8 May 2009 (pp. 88-95). (9780769536774 (ISBN)).
  30. Tsiknakis, M.N., Sfakianakis, S.G., Rueping, S., Trelles, O., Siestang, Th., Claerhout, B., & Virvilis, V. (2008). A semantic grid services architecture in support of efficient knowledge discovery from multilevel clinical and genomic datasets. 1st International Conference on Health Informatics, HEALTHINF 2008, Funchal, Madeira, 28 January 2008 through 31 January 2008 (vol. 1, pp. 279-287). (9789898111166 (ISBN)).
  31. Tsiknakis, M.N., Sfakianakis, S.G., Potamias, G.A., Zacharioudakis, G., & Kafetzopoulos, D. (2007). A semantic grid infrastructure enabling integrated access and knowledge discovery from multilevel data in post-genomic clinical trials. Sheffield, U.K., July. Springer (978-1-84628-990-3).
  32. Ruping, S., Sfakianakis, S.G., & Tsiknakis, M.N. (2007). Extending workflow management for knowledge discovery in clinico-genomic data. In Proceedings of the HealthGrid 2007 Conference, Geneva, Switzerland, 24-27 April (vol. 126, pp. 184-193). Netherlands (0926-9630).
  33. Wegener, D., Sengstag, T., Sfakianakis, S.G., Ruping, S., & Assi, A. (2007). GridR: An R-Based Grid-Enabled Tool for Data Analysis in ACGT Clinico-Genomics Trials. e-Science and Grid Computing, IEEE International Conference on e-Science and Grid Computing, Bangalore, India(pp. 228-235).
  34. Tsiknakis, M.N., Sfakianakis, S.G., Potamias, G.A., & Kafetzopoulos, D. (2007). Integration of heterogeneous, multilevel biomedical data: Semantic Grid services enabling integrated access, analysis and knowledge discovery in the context of multicentric, post-genomic clinical trials. In Proceedings of the 9th International Conference on Enterprise Information Systems, Funchal, Madeira – Portugal, 12-16 June.
  35. Potamias, G.A., Koumakis, L., Kanterakis, A., Sfakianakis, S.G., Analyti, A., Moustakis, V.A., Kafetzopoulos, D., Ruping, S., & Tsiknakis, M.N. (2007). Knowledge Discovery Scientific Workflows in Clinico-GenomicsIn Proceedings of the19th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 07), Patras, Greece, 29-31 October (pp. 91-95). IEEE Computer Society.
  36. Tsiknakis, M.N., Kafetzopoulos, D., Potamias, G.A., Analyti, A., Marias, K., & Sfakianakis, S.G. (2006). Developing a European Biomedical GRID for post-genomic research on Cancer. Proceedings of the IEEE International Topic Conference on Information Technology in Biomedicine (ITAB-2006), Ioannina, Greece, 25-28 October.
  37. Sfakianakis, S.G., Chronaki, C., Bernstein, I., Norgaard, J.R., Katehakis, D.G., Potamias, G.A., & Tsiknakis, M.N. (2006). Early experience from HL7 v3 tools, the Pedigree topic, and CDA in the Danish HNPCC Registry. International HL7 Interoperability Conference IHIC, Cologne, Germany, 24-25 August.
  38. Chronaki, C., Chiarugi, F., Sfakianakis, S.G., & Zywietz, C. (2005). A web service for conformance testing of ECG records to the SPC-ECG standard. Computers in Cardiology, 2005, Lyon, France, September (pp. 961-964).
  39. Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Fundamental components for the realization of a federated integrated electronic health record environment. 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Istanbul, 25 October 2001 through 28 October 2001 (vol. 4, pp. 3646-3649). (04549244).
    Papers in Proceedings (abstract reviewed)

  1. Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2002). Integrated Electronic Health Record (in Greek). Proceedings of the 6th FORTH Workshop, Ioannina and Metsovo, Greece, March 1-3, 2002, (pp. 70-71).

              Periodicals (21)

                Journal Articles

              1. Pampouchidou, A., Pediaditis, M., Maridaki, A., Awais, M., Vazakopoulou, C.-M., Sfakianakis, S.G., Tsiknakis, M.N., Simos, P.G., Marias, K., Yang, F., & Meriaudeau, F. (2017). Quantitative comparison of motion history image variants for video-based depression assessment. EURASIP Journal on Image and Video Processing, 64, Springer Open (https://jivp-eurasipjournals.springeropen.com/articles/10.1186/s13640-017-0212-3), Special Issue on “Applications of Visual Analysis of Human Behaviour” doi: https://doi.org/10.1186/s13640-017-0212-3.
              2. Koumakis, L., Kamana, S, Potamias, G.A., Sfakianakis, S.G., van Leeuwen, J, Zacharioudakis, G., Moustakis, V.A., Zervakis, M.E., Bucur, A., Marias, K., Graf, N., & Tsiknakis, M.N. (2015). Bridging miRNAs and pathway analysis in clinical decision support; a case study in nephroblastoma. Network Modeling Analysis in Health Informatics and Bioinformatics4(1).
              3. Koumakis, L., Sigdel, K., Potamias, G.A., Sfakianakis, S.G., van Leeuwen, J, Zacharioudakis, G., Moustakis, V.A., Zervakis, M.E., Bucur, A., Marias, K., Graf, N., & Tsiknakis, M.N. (2015). Bridging miRNAs and pathway analysis in clinical decision support: a case study in nephroblastoma. Network modeling analysis in health informatics and bioinformatics, 1-12, Springer doi: 10.1007/s13721-015-0102-5.
              4. Sfakianaki, P., Koumakis, L., Sfakianakis, S.G., Iatraki, G., Zacharioudakis, G., Graf, N., Marias, K., & Tsiknakis, M.N. (2015). Semantic biomedical resource discovery: a Natural Language Processing framework. BMC Medical Informatics and Decision Making 15(77).
              5. Notas, G. , Pelekanou, V., Kampa, M., Alexakis, K., Sfakianakis, S.G., Laliotis, A., Askoxilakis, J., Tsentelierou, E., Tzardi, M., Tsapis, A., & Castanas, E. (2015). Tamoxifen induces a pluripotency signature in breast cancer cells and human tumors. Molecular Oncology.
              6. Sfakianakis, S.G., Bei, E. S., Zervakis, M.E., Vassou, D., & Kafetzopoulos, D. (2014). On the Identification of Circulating Tumor Cells in Breast Cancer. Biomedical and Health Informatics, IEEE J Biomed Health Inform18(3), 773-782.
              7. Stamatakos, G.S., Dionysiou, D.D., Lunzer, A., Belleman, R., Kolokotroni, E., Georgiadi, E., Erdt, M., Dong, F., Rueping, S., Giatili, S., d Onofrio, A., Sfakianakis, S.G., Marias, K., Desmedt, C., Tsiknakis, M.N., & Graf, N. (2014). The Technologically Integrated Oncosimulator: Combining Multiscale Cancer Modeling with Information Technology in the In Silico Oncology Context. . , 18(3), 840-854, doi: 10.1109/JBHI.2013.2284276.
              8. Sakkalis, V., Sfakianakis, S.G., Tzamali, E., Marias, K., Stamatakos, G.S., Misichroni, F., Ouzounoglou, E., Kolokotroni, E., Dionysiou, D.D., Johnson, D., McKeever, S., & Graf, N. (2014). Web-Based Workflow Planning Platform Supporting the Design and Execution of Complex Multiscale Cancer ModelsIEEE Journal of Biomedical and Health Informatics.
              9. Brochhausen, M., Spear, A.D., Cocos, C., Weiler, G., Martin, L., Anguita, A., Stenzhorn, H., Daskalaki, E., Schera, F., Schwarz, U., Sfakianakis, S.G., Kiefer, S., Doerr, M., Graf, N., & Tsiknakis, M.N. (2011). The ACGT Master Ontology and its applications - Towards an ontology-driven cancer research and management systemJournal of Biomedical Informatics44(1), 8-25, (1532-0480; 1532-0464).
              10. Chronaki, C., Sfakianakis, S.G., Petrakis, Y., Yang, M., Radulescu, M., Eichelberg, M., Erturkmen, G.L., Hinterbuchner, L., Arbelo, E., & Dogac, A. (2011). Integrating Out-Patient and Remote Follow-up of Cardiovascular Implantable Electronic Device Patients. PACE (ICPES2011)34(11), 1357-8.
              11. Sfakianakis, S.G., Blazadonakis, M.E., Dimou, I.N., Zervakis, M.E., Tsiknakis, M.N., Potamias, G.A., Kafetzopoulos, D., & Lowe, D. (2010). Decision Support Based on Genomics: Integration of Data and Knowledge Driven Reasoning. International Journal of Biomedical Engineering and Technology 3(3/4), 287-307.
              12. Kanterakis, A., Potamias, G.A., Zacharioudakis, G., Koumakis, L., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: a scenario for the coupling of molecular regulatory pathways and gene-expression profiles. Stud Health Technol Inform160, 1304-1308.
              13. Ruping, S., Wegener, D., Sfakianakis, S.G., & Sengstag, T. (2009). Workflows for intelligent monitoring using proxy services. Studies in health technology and informatics147, 277-282, Netherlands (0926-9630; 0926-9630).
              14. Tsiknakis, M.N., Brochhausen, M., Nabrzyski, J., Pucacki, J., Sfakianakis, S.G., Potamias, G.A., Desmedt, C., & Kafetzopoulos, D. (2008). A semantic grid infrastructure enabling integrated access and analysis of multilevel biomedical data in support of postgenomic clinical trials on cancer. IEEE Trans Inf Technol Biomed12(2), 205-217, (10897771).
              15. Katehakis, D.G., Sfakianakis, S.G., Kavlentakis, G., Anthoulakis, D., & Tsiknakis, M.N. (2007). Delivering a Lifelong Integrated Electronic Health Record Based on a Service Oriented Architecture. IEEE Transactions on Information Technology in Biomedicine11(6), 639-650.
              16. Tsiknakis, M.N., Rueping, S., Martin, L., Sfakianakis, S.G., Bucur, A., Sengstag, T., Brochhausen, M., & Pucacki, J. (2007). Developing a European Grid infrastructure for cancer research: vision, architecture, and services. eCancerMedicalScience Journal (on line journal)1, eCancerMedicalScience Journal.
              17. Sfakianakis, S.G., Chronaki, C., Chiarugi, F., Conforti, F., & Katehakis, D.G. (2007). Reflections on the role of open source in health information system interoperability. Yearbook of medical informatics, 50-60, Germany (0943-4747; 0943-4747).
              18. Tsiknakis, M.N., Katehakis, D.G., Sfakianakis, S.G., Kavlentakis, G., & Orphanoudakis, S.C. (2005). An Architecture for Regional Health Information Networks Addressing Issues of Modularity and Interoperability. Journal of Telecommunications and Information Technology (JTIT)4, 26-39.
              19. Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). An Infrastructure for Integrated Electronic Health Record Services: The Role of XML (Extensible Markup Language). , 77, 1074-1079, Gunther Eysenbach; Centre for Global eHealth Innovation, Toronto, Canada (1438-8871).
              20. Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). An infrastructure for integrated electronic health record services: The role of XML (extensible markup language). J.Med.Internet Res.3(1), 83-91, (14388871).
              21. Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). An infrastructure for integrated electronic health record services: the role of XML. Technol.Health Care8(3-4), 189-190, Amsterdam, The Netherlands, The Netherlands: IOS Press (0928-7329).

                              Technical & Research Reports (1)

                                    ICS-FORTH Technical Reports

                                  1. Katehakis, D.G., Sfakianakis, S.G., Anthoulakis, D., Kavlentakis, G., Tzelepis., Th.Z., Orphanoudakis, S.C., & Tsiknakis, M.N. (2005). A Holistic Approach for the Delivery of the Integrated Electronic Health Record within a Regional Health Information Network. 2005.TR350_Holistic_Approach_Delivery_Integrated_Electronic_Health_Record.pdf.
                                          Found: 62 publications
                                          © Copyright 2007 FOUNDATION FOR RESEARCH & TECHNOLOGY - HELLAS, All rights reserved.