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Current Position

Haridimos Kondylakis is currently a Collaborating Researcher at Computational Medicine Laboratory (CML), Institute of Computer Science, Foundation of Research & Technology-Hellas (FORTH). He holds a Ph.D and an M.Sc. in Computer Science from University of Crete. He is participating in several European Research projects and he also acts as a regular reviewer for a number of scientific journal and conferences.


Organizational Activities in 2012/2013

Past Positions

Haridimos Kondylakis served in Hellinic Army as a Special Scientist - Programmer/Analyst (11/2010-08/2011). Before that, he was a Research Assistant at the Information Systems Laboratory of FORTH-ICS where he conducted basic and applied research around semantic-network-based information systems and databases within several EU-founded research projects (05/2003-11/2010). He also served as an external advisor for Planet S.A (06/2009-10/2009).

Contact Information

  • Postal Address: Institute of Computer Science,Foundation for Research and Technology-Hellas (FORTH), Science and Technology Park of Crete, N. Plasthra 100, Vassilika Vouton, ,GR 700 13 Heraklion, Crete, Greece
  • Phone: +30 2810 391449
  • Fax: +30 2810 391428
  • Email: kondylak [at] ics.forth.gr

Research Interests

  • Knowledge Representation & Management
  • Information Extraction
  • Conceptual Modelling
  • Information Integration and Retrieval Systems for the web,
  • Interoperability of Heterogeneous and Distributed Information Bases,
  • Biomedical Information Systems.

Fellowships

  • Phd Student Research Fellowship, Foundation for Research and Technology – Hellas (FORTH) - Institute of Computer Science (ICS)
  • MSc Student Research Fellowship, Foundation for Research and Technology – Hellas (FORTH) - Institute of Computer Science (ICS)
  • Undergraduate Student Research Fellowship, Foundation for Research and Technology – Hellas (FORTH) - Institute of Computer Science (ICS)

Research Projects

Current Projects

MyHealhAvatar - A Demonstration of 4D Digital Avatar Infrastructure for Access of Complete PatientInformation (FP7-ICT-2011-9)

  • Semantic Models
  • Data Integration
  • Knowledge Extraction

EURECA - Enabling information re-Use by linking clinical REsearch and CAre (FP7-ICT-2011-7)

  • Semantic Models
  • Ontology Matching for Matching Clinical Trials with Patients
  • Knowledge Extraction

p-MEDICINE - From data sharing and integration via VPH models to personalized medicine (FP7-ICT-2009.5.3)

  • Semantic Integration in DataWarehouses
  • Ontology-based data mining in DataWarehouses
  • Ontology evolution in DataWarehouses

eHealthMonitor - Intelligent Knowledge Platform for Personal Health Monitoring Services (FP7-ICT-2011-7)

  • Semantic Models
  • Data Integration
  • Knowledge Extraction

Integrate - Driving Excellence in Integrative Cancer Research through Innovative Biomedical Infrastructures (FP7-ICT-2009.5.3)

  • Semantic Integration in DataWarehouses
  • Ontology-based data mining in DataWarehouses
  • Ontology evolution in DataWarehouses

Past Projects

plugIT - Business and IT Alignment using Model-Based Plug-In Framework (FP7-3ICT-231413)

  • Development of Next Generation Modelling Methodology
  • Development of Next Generation Modelling Framework
  • Domain Ontology engineering through modelsS

TEAM-Tightening Knowledge Sharing in Distributed software communities by applying semantic technologies(FP6-IST-2005-2.5.5)

  • Evaluation and Refinement of the TEAM Ontology

LOCCANDIA-Lab-On-Chip based protein profiling for CANcer DIAgnosis (FP6-IST-2005-2.5.2)

  • Specifications and Design for the Proteomic Information Platform
  • Design and Specifications for the external components intergation

ACGT - Advancing Clinico-Genomic Clinical Trials on Cancer (FP6-IST-026996)

  • Specification & Development of Semantic tools for integrating clinico-genomic data
  • Biomedical ontology development (Now an OBO foundry ontology)

PROGNOCHIP - Development and Establishment of DNA Microarray Technology in Greece: Identification and Validation of Classification and Prognosis Molecular Markers for Breast Cancer (GSRT - Op. Pr. Competitiveness)

  • Development of a platform for modeling & storing Microarray experiments
  • Integration of clinico-genomic data in order to extract dna markers

Selene - Self e-Learning Networks (EU - IST)

  • Creation of RDF description for e-learning

CYCLADES - An Open Collaborative Virtual Archive Environment (EU - IST)

  • Evaluation of Cyclades system

Prover - An interactive verifier for logic Programs (National Project)

  • Development of the prover system

My Conference Calendar

Invited Talks

  • CIDOC-CRM Method: A Standardisation View, BOC Partner Meeting, Vienna, September 8, 2011

Publications by year
All (29) - 2013 (3) - 2012 (4) - 2011 (2) - 2010 (6) - 2009 (2) - 2008 (5) - 2007 (3) - 2006 (3)

All (29) - Book Chapters (2) - Journal Papers (3) - Conference Papers (16) - Workshop Papers (5) - Technical Reports (1) - Dissertations (2)

2013

Haridimos Kondylakis, Dimitris Plexousakis: Ontology Evolution without Tears, Journal of Web Semantics (2013), Elsevier, DOI.

Fouad Zablith, Grigoris Antoniou, Mathieu d'Aquin, Giorgos Flouris, Haridimos Kondylakis , Enrico Motta, Dimitris Plexousakis , Marta Sabou: Ontology Evolution: A Process Centric Survey, Knowledge Engineering Review (KER), (in press), 2013, Elsevier.

Haridimos Kondylakis, Lefteris Koumakis, Manolis Tsiknakis, Kostas Marias, Eirini Genitsaridi, Gabriella Pravettoni, Alessandra Gorini, Ketti Mazzocco: Smart recommendation services in support of patient empowerment and personalized medicine., Multimedia Services in Intelligent Environments – Recommendation Services, (in press), 2013, Springer-Verlag.

2012

Haridimos Kondylakis, Lefteris Koumakis, Eirini Genitsaridi, Manolis Tsiknakis, Kostas Marias, Gabriella Pravettoni, Alessandra Gorini, Ketti Mazzocco: IEmS: A collaborative Environment for Patient Empowerment, IEEE 12th International Conference on BioInformatics and BioEngineering (BIBE),pp. 535-540, 2012, Larnaca, Cyprus.

Haridimos Kondylakis, Dimitris Plexousakis:Ontology Evolution: Assisting Query Migration, 31st International Conference on Conceptual Modeling (ER), 2012, pp. 331-344, Florence, Italy.

Haridimos Kondylakis, Manolis Tsiknakis: Computerized Clinical Guidelines: Current Status & Directions for Future Research, Medical Informatics Europe (MIE),pp. 432-436, 2012, Italy, Pisa

Emmanouil Marakakis, Haridimos Kondylakis, Nikos Papadakis: Knowledge Representation in a Proof Checker for Logic Programs, Knowledge Representation, ISBN 979-953-307-594-4

2011

Haridimos Kondylakis, Dimitris Plexousakis: Ontology Evolution in Data Integration: Query Rewriting to the Rescue, 30th International Conference on Conceptual Modeling (ER), 2011:393-401

Haridimos Kondylakis, Dimitris Plexousakis: Exelixis: Evolving Ontology-Based Data Integration System, SIGMOD Conference 2011: 1283-1286

2010

Haridimos Kondylakis: Ontology Evolution in Data Integration, PhD Thesis, Computer Science Department, University of Crete, 2010

Haridimos Kondylakis, Dimitris Plexousakis, Yannis Tzitzikas : Ontology Evolution in Data Integration, International Workshop on Ontoogy Dynamics (IWOD at ISWC), 2010

Haridimos Kondylakis, Dimitris Plexousakis, Holger Wache , Daniela Fieldkamp , Knut Hinkelmann, Alexander Bergmayr :Semantic Technology to enable Business and IT alignment, OKM 2010

Haridimos KondylakisDimitris Plexousakis, Yannis Tzitzikas : Εξέλιξη οντολογιών σε συστήματα ολοκήρωσης πληροφορίας. Hellinic Data Management Symposium, 2010

Haridimos KondylakisDimitris Plexousakis, Yannis Tzitzikas : Ontology evolution in Data Integration. In the poster Session of Extended Semantic Web Conference (ESWC), 2010

Nikos Papadakis, P. Petrakis, Dimitris Plexousakis, Haridimos Kondylakis,  : A Solution to the Ramification Problem Expressed in Temporal Description Logics.  In Proceedings of the International Workshop on New Forms of Reasoning for the Semantic Web: Scalable and Dynamic (at ESWC 2010)

Haridimos KondylakisDimitris Plexousakis: Enabling ontology evolution in data integration. EDBT/ICDT Workshops 2010

2009

Haridimos KondylakisMartin DoerrDimitris Plexousakis: Empowering Provenance in Data Integration. ADBIS 2009:270-285

Haridimos KondylakisGiorgos FlourisDimitris Plexousakis: Ontology and Schema Evolution in Data Integration: Review and Assessment.OTM Conferences 2009:932-947

2008

Eleni G. ChristodoulouMarina IoannouMaria KafousiElias SanidasGeorgios PapagiannakisVasiliki DanilatouGeorgia TsilikiThanasis MargaritisHaridimos KondylakisDimitris ManakanatasLefteris KoumakisAlexandros KanterakisStamatis VassilarosManolis TsiknakisAnastasia AnalytiGeorge PotamiasDimitris TsiftsisEfstathios StathopoulosDimitris Kafetzopoulos: A new gene expression signature related to breast cancer estrogen receptor status. BIBE 2008:1-7

Manos KalaitzakisVangelis KritsotakisHaridimos KondylakisGeorge PotamiasManolis TsiknakisDimitris Kafetzopoulos: An Integrated Clinico-Proteomics Information Management and Analysis Platform. CBMS 2008:218-220

Luis MartínAlberto AnguitaVictor MaojoErwin BonsmaAnca I. D. BucurJeroen VrijnsenMathias BrochhausenCristian Cocos,Holger StenzhornManolis TsiknakisMartin DoerrHaridimos Kondylakis: Ontology Based Integration of Distributed and Heterogeneous Data Sources in ACGT. HEALTHINF 2008:301-306

Giorgos FlourisDimitris ManakanatasHaridimos KondylakisDimitris PlexousakisGrigoris Antoniou: Ontology change: classification and survey. Knowledge Eng. Review (KER) 23(2):117-152 (2008)

Grigoris AntoniouAntonis BikakisPolyvios DamianakisMixalhs FoukarakisGiorgos IacovidisMarianna KarmaziHaridimos Kondylakis,Antreas MakridakisGiorgos NikiforosGrigoris PapadourakisManolis PapoutsakisAggeliki PsyharakiGiorgos StratakisPanagiotis TourlakisPetros TsialiamanisGiorgos VasiliadisGerd WagnerDimitris Velegrakis: A Multi-agent Environment for Serving Proof Explanations in the Semantic Web. SETN 2008:26-37

2007

Haridimos KondylakisAnastasia AnalytiDimitris Plexousakis: Quete: Ontology-Based Query System for Distributed Sources. ADBIS 2007:359-375

Manolis Tsiknakis, Pierre Grangeat, Pierre Alain Binz, George Potamias, Frederique Lisacek, Laurent Gerfault, Caroline PAULUS, Dimitris Manakanatas, Vaggelis Kondylakis, Haris Kondylakis, Manuel Perez, Dimitris Plexousakis: Functional specifications of an integrated proteomics information management and analysis platform, 29th IEEE EMBS Annual International Conference, 2007, Lyon Franc

George Potamias, Manolis Tsiknakis, Dimitris Kafetzopoulos, Manuel M. Perez, Blanca Jordan, Pierre-Alain Binz, Frederique Lisacek, Vangelis Kritsotakis, Dimitris Manakanatas, Haridimos Kondylakis, Manos Kalaitzakis, Laurent Gerfault, Caroline Paulus, and Pierre Grangeat., The Loccandia Integrated Clinico-Proteomics Environment, Intrumental Methods of Analysis - Modern Trends and Applications" Conference (IMA 2007), Patra, Greece

2006

Anastasia AnalytiHaridimos KondylakisDimitris ManakanatasManos KalaitzakisDimitris PlexousakisGeorge Potamias: Integrating Clinical and Genomic Information Through the PrognoChip Mediator. ISBMDA 2006:250-261

Haridimos KondylakisMartin Doerr,  Dimitris Plexousakis: Mapping Language for Information Integration. Technical Report ICS-FORTH/385

Haridimos Kondylakis : QUETE: Query Processing in Distributed Database Systems, Master of Science Thesis, Dept. of Computer Science, University of Crete,

Teaching

Computer Science Department, University of Crete

  • Teaching Assistant for "Logic" Course
  • Teaching Assistant for "Files and Databases" Course
  • Teaching Assistant for "Database Management Systems" Course
  • Teaching Assistant for "Knowledge Representation and Processing" Course

Department Of Applied Informatics And Multimedia, Technological Educational Institute Of Crete

  • Laboratory Assistant the lesson "Web Programming"
  • Laboratory Assistant the lesson "Object-Oriented Programming"

Computer Science Division, Technological Educational Institute Of Crete

  • Laboratory Assistant for the lesson "Programming"
  • Laboratory Assistant for "Programming in C I"
  • Laboratory Assistant for "Programming in C II"
  • Laboratory Assistant for "Programming in Visual Basic"
  • Laboratory Assistant for "Windows/Office/Web"

Vocational Training Institute

  • Laboratory Assistant for the lesson "Oracle Database"
  • Laboratory Assistant for the lesson "Computer Networks II"
  • Laboratory Assistant for the lesson "Management of Computer Networks"
  • Laboratory Assistant for the lesson "Database Systems"

Usefull Links

  • Έναρξη Ατομικής Επιχείρησης - Οδηγίες