Conferences

Papers in Proceedings (full-paper reviewed)

Tsiknakis, M.N., Sfakianakis, S.G., Zacharioudakis, G., & Koumakis, L. (2010). A framework supporting sharing and reuse of data and tools in translational cancer research: Lessons learned for VPH research. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (IARWISO). September 2010, Athens, Greece
Pelegris, P., Banitsas, K., Orbach, T., & Marias, K. (2010). A Novel Method to Detect Heart Beat Rate Using a Mobile Phone. 32nd IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2010). August 31-September 4, Buenos Aires, Argentina
Martin, L., Anguita, A., Graf, N., Tsiknakis, M.N., Brochhausen, M., Rueping, S., Bucur, A., Sfakianakis, S.G., & Stenzhorn, H. (2010). ACGT: Advancing Clinico-genomic trials on cancer – Four years of experience. AMIA 2010 Annual Symposium, Washington DC. 13-15 November 2010, Washington DC
Tsiknakis, M.N., & Spanakis, E.G. (2010). Adoption of innovative eHealth services in prehospital emergency management: a case study. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010). Corfu, Greece
Koumakis, L., Kanterakis, A., Potamias, G.A., Sfakianakis, S.G., Zacharioudakis, G., & Tsiknakis, M.N. (2010). Analyzing gene regulatory networks and gene expression profiles via scientific workflows. International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery. 7-9 July 2010, Chania, Greece
Roniotis, A., Panourgias, K., Ekaterinaris, J., Marias, K., & Sakkalis, V. (2010). Approximating the diffusion – reaction equation for developing glioma models for the ContraCancrum Project: a showcase. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
Farmaki, C., Mavrigiannakis, K., Marias, K., Zervakis, M.E., & Sakkalis, V. (2010). Assessment of Automated Brain Structures Segmentation based on the Mean-shift Algorithm: Application in Brain Tumor. ITAB2010. November 2-5, Corfu, Greece
Marias, K. (2010). Clinically Oriented Translational Cancer Multilevel Modelling. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
Roniotis, A., Marias, K., Sakkalis, V., & Stamatakos, G.S. (2010). Comparing Finite Element and Finite Difference Techniques as Applied to the Development of Diffusive Models of Glioblastoma Multiforme Growth. 32nd IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2010). August 31-September 4, 2010, Buenos Aires, Argentina
Marias, K. (2010). ContraCancrum: Clinically Oriented Translational Cancer Multilevel Modelling. International VPH Conferences (VPH2010). September 30-October 1, Brussels, Belgium
Tsiaras, V., & Tollis, I.G. (2010). DAGmaps and Dominance Relationships. Lecture Notes in Computer Science. (pp. 424-425)
Tollis, I.G., & Tsiaras, V. (2010). DAGmaps and ε-Visibility Representations of DAGs. Lecture Notes in Computer Science. (pp. 357-368)
Sakkalis, V., Tsiaras, V., Zervakis, M.E., & Tollis, I.G. (2010). EEG Biomarker identification using Graph Theoretic concepts. International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery. July 7-9, Chania, Greece
Grigonyte, G., Brochhausen, M., Martin, L., Tsiknakis, M.N., & Haller, J. (2010). Evaluating Ontologies with NLP-Based Terminologies – A Case Study on ACGT and Its Master Ontology. 6th International Conference on Formal Ontology in Information Systems (FOIS). May 11-14, Toronto, Canada
Sakkalis, V., Roniotis, A., Farmaki, C., Karatzanis, I., & Marias, K. (2010). Evaluation framework for the multilevel macroscopic models of solid tumor growth in the glioma case. 32nd IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2010). August 31-September 4, 2010, Buenos Aires, Argentina
Roniotis, A., Sakkalis, V., Stamatakos, G.S., Zervakis, M.E., & Marias, K. (2010). Glioma diffusive modeling: Calculating diffusion coefficients from atlases with proportional tissue information. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
Roniotis, A., Marias, K., Sakkalis, V., Skounakis, E., & Zervakis, M.E. (2010). Incorporating different proliferation rates in glioma modeling using vectorization operators. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
Sfakianakis, S.G., Zervakis, M.E., Tsiknakis, M.N., & Kafetzopoulos, D. (2010). Integration of Biological Knowledge in the Mixture-of-Gaussians Analysis of Genomic Clustering. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010). Nov 2010, Corfu, Greece
Chronaki, C., Kontogiannis, V., Panagopoulos, D., Katehakis, D.G., Vourvahakis, D., & Koutentaki-Mountraki, K. (2010). Interoperability in Disaster Medicine and Emergency Management. in IHIC2010. Rio de Janeiro, Brazil
Triantafullou, S., Tsamardinos, I., & Tollis, I.G. (2010). Learning Causal Structure from Overlapping Variable Sets. in Y.W. Teh and M. Titterington (Eds.), Proceedings of The Thirteenth International Conference on Artificial Intelligence and Statistics (AISTATS). May 13-15, Chia Laguna, Sardinia, Italy. (pp. 860-867)
Moustakis, V.A., Laine, M., Koumakis, L., Loos, B.G., & Potamias, G.A. (2010). Modeling and Validating Genotype Knowledge: the Case of Periodontal Disease. Cairo International Conference on Biomedical Engineering (CIBEC 2010).
Laine, M., Moustakis, V.A., Koumakis, L., Potamias, G.A., & Loos, B.G. (2010). Modeling susceptibility to periodontitis. International and American Association for Dental Research (IARD) General Session 2010. Barcelona Spain July 14-17.
Kanterakis, A., Zacharioudakis, G., Koumakis, L., Potamias, G.A., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: A scenario for the coupling of molecular regulatory pathways and gene-expression profiles. 13th International Congress on Medical Informatics (MEDINFO 2010). 12 - 15 of September 2010, South Africa
Stamatakos, G.S., Dionysiou, D.D., Kolokotroni, E., Georgiadi, E., Giatili, S., Hoppe, A., Desmedt, C., Lunzer, A., Erdt, M., Jacques, J., Puckacki, J., Belleman, R., Melis, P., d Onofrio, A., Buffa, F., Claerhout, B., Rueping, S., Marias, K., Tsiknakis, M.N., & Graf, N. (2010). The ACGT Oncosimulator: from Conceptualization Towards Development via Multiscale Cancer Modeling. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
Stamatakos, G.S., Dionysiou, D.D., Giatili, S., Kolokotroni, E., Georgiadi, E., Roniotis, A., Sakkalis, V., Coveney, P.V., Shunzhu, W., Steven, M., Zasada, St., Folarin, A., Büchler, P., Tibault, B., Bauer, St., Reyes, M., Bily, T., Bednar, V., Karasek, M., Graf, N., Bohle, R., Meese, E., Yoo-Jin, K., Stenzhorn, H., Clapworthy, G., Liu, E., Sabczynski, J., & Marias, K. (2010). The ContraCancrum Oncosimulator: Integrating Biomechanisms Across Scales in the Clinical Context. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
Stenzhorn, H., Weiler, G., Brochhausen, M., Schera, F., Kritsotakis, V., Tsiknakis, M.N., Kiefer, S., & Graf, N. (2010). The ObTiMA System – Ontology-based Managing of Clinical Trials. 13th International Congress on Medical Informatics (MEDINFO 2010). 12 - 15 of September 2010, South Africa
Zepp, J., Graf, N., Skounakis, E., Bohle, R., Meese, E., Stenzhorn, H., Yoo-Jin, K., Farmaki, C., Sakkalis, V., Reith, W., Stamatakos, G.S., & Marias, K. (2010). Tumor segmentation: The impact of standardized signal intensity histograms in glioblastoma. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
Pediaditis, M., Tsiknakis, M.N., Vorgia, P., Kafetzopoulos, D., Danilatou, V., & Fotiadis, D.I. (2010). Vision-Based Human Motion Analysis in Epilepsy – Methods and Challenges. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010). Nov 2010, Corfu, Greece

Papers in Proceedings (abstract reviewed)

Graf, N., Sengstag, T., Schera, F., Martin, L., Claerhout, B., Stenzhorn, H., Nourkami, N., Gessler, M., & Tsiknakis, M.N. (2010). Advanced Wilms Tumour Scenario using the ACGT environment. 7th International Meeting on the Biology of Childhood renal tumours. Canada
Chronaki, C., Plößnig, M., Tuncer, F., Erturkmen, G.L., Lüpkes, C., Eichelnberg, M., Navarro, X., Pecho, W., & Dogac, A. (2010). Interoperability challenges in the health management of patients with implantable defibrillators. in Computing in Cardiology. September 27-30, Belfast
Kouroubali, A., Esterle, L., De Moor , G., & Bruun-Rasmussen, M. (2010). Large Scale EHR- implementations: The Other Side of the Story: Social, Organizational & Cultural Aspects. MEDINFO 2010. September 13-16, Cape Town, South Africa

Poster presentations (abstract reviewed)

Dogac, A., Chronaki, C., Laleci, G.B., Yuksel, M., Thoben, W., Plößnig, M., Strohmer, B., Pecho, W., Guillén, A., & Brugada, J. (2010). An Intelligent Platform for Personalized Remote Monitoring of the CIED Patients. Poster presented at MedInfo. Capetown, South Africa
Grangeat, P., Gerfault, L., Paulus, C., Kritsotakis, V., Tsiknakis, M.N., Lisacek, F., Binz, P.A., Perez, M., Trauchessec, M., & Brun, V. (2010). First demonstration on NSE biomarker of a computational environment dedicated to lab-on-chip based cancer diagnosis. 58th ASMS Conference on Mass Spectrometry and Allied Topics. May 23 - 27, Salt Lake City, Utah
Potamias, G.A. (2010). Revealing Disease Molecular Regulatory Mechanisms: Coupling Microarrays and Gene Regulatory Networks. Proceedings of the 5th Conference of the Hellenic Society for Computational Biology and Bioinformatics (HSCBB10). October 17-19, Alaxandrouplois, Greece
Potamias, G.A., Koumakis, L., Kanterakis, A., & Moustakis, V.A. (2010). Towards the Discovery of Reliable Biomarkers from Gene-Expression Profiles: An Iterative Constraint Satisfaction Learning Approach. Artificial Intelligence: Theories, Models and Applications, 6th Hellenic Conference on AI, SETN 2010. 4-7 May, Athens, Greece. (pp. 233-242). Springer (978-3-642-12841-7)