Conferences

Papers in Proceedings (full-paper reviewed)

• Sakkalis, V., Manikis, G., Papanikolaou, N., Karatzanis, I., & Marias, K. (2012). A software prototype for the Assessment of Tumor Treatment Response using diffusion and perfusion MR imaging. 34th IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2012), San Diego, USA. August 28-September 1, (pp. 388-391)
• Sfakianakis, S.G., Sakkalis, V., Marias, K., Stamatakos, G.S., McKeever, S., Deisboeck, T., & Graf, N. (2012). An architecture for integrating cancer model repositories. 34th IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2012), San Diego, USA, August 28-September 1, 2012.  (pp. 6628-6631)
• Zepp, J., Graf, N., Karatzanis, I., Stenzhorn, H., Manikis, G., Sakkalis, V., Marias, K., Reith, W., & Stamatakos, G.S. (2012). An innovative mathematical analysis of routine MRI scans in patients with glioblastoma using DoctorEye. 12th International Conference on BioInformatics and BioEngineering, Larnaca, Cyprus, November 11-13, 2012.  (pp. 620-625)
• Sakkalis, V., Sfakianakis, S.G., & Marias, K. (2012). Bridging social media technologies and scientific research: an exemplary platform for VPH modellings. 3rd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2012), Workshop on Advances in Personalized Healthcare Services, Wearable Mobile Monitoring, and Social Media Pervasive Technologies (APHS 2012), Paris, France, November 21-23, 2012. 
• David, R., Graf, N., Karatzanis, I., Stenzhorn, H., Manikis, G., Sakkalis, V., Stamatakos, G.S., & Marias, K. (2012). Clinical Evaluation of DoctorEye Platform in Nephroblastoma. 7th Conference of the Hellenic Society for Computational Biology and Bioinformatics (HSCBB 2012), Heraklion, Greece, October 4-6, 2012. 
• Kondylakis, H., & Tsiknakis, M.N. (2012). Computerized Clinical Guidelines: Current Status & Directions for Future Research. Medical Informatics Europe (MIE), Italy, Pisa, 2012.  (pp. 432-436)
• Spanakis, E.G., & Voyiatzis, A.G. (2012). DAPHNE: A Disruption-Tolerant Application Proxy for e-Health Network Environments. 3rd International Conference on Wireless Mobile Communication and Healthcare, Paris, France, November 21-23, 2012. 
• Spanakis, E.G., & Tsiknakis, M.N. (2012). Delivery of secure eHealth services and communications. International Conference on Telecommunication Systems, Modeling and Analysis (ICTSM2012), Prague, Czech Republic, May 24-26, 2012. 
• Karatzanis, I., Kontogiannis, V., Spanakis, E.G., Chiarugi, F., Fursse, J., & Jones, R.W. (2012). Empowering Patients through a Patient Portal for an Improved Diabetes Management . 3rd International Conference on Wireless Mobile Communication and Healthcare November, Workshop on Advances in Personalized Healthcare Services, Wearable Mobile Monitoring, and Social Media Pervasive Technologies (APHS 2012) . 
• Tzedakis, G., Tzamali, E., Sakkalis, V., Roniotis, A., & Marias, K. (2012). Hybrid Model for Tumor Spheroids with Intratumoral Oxygen Supply Heterogeneity. 5th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation, Athens, Greece, October 22-23, 2012. 
• Kondylakis, H., Koumakis, L., Genitsaridi , E., Tsiknakis, M.N., Marias, K., Pravettoni, G, Gorini, A., & Mazzocco, M. (2012). IEmS: A collaborative Environment for Patient Empowerment. IEEE International Conference on BioInformatics and BioEngineering (BIBE), 2012. 
• Kondylakis, H., & Plexousakis, D. (2012). Ontology Evolution: Assisting Query Migration. Conceptual Modeling 31st International Conference ER 2012, Florence, Italy, October 15-18, 2012. Proceedings.  (pp. 331-344). Berlin Heidelberg: Springer (978-3-642-34001-7)
• Sfakianakis, S.G., Sakkalis, V., & Marias, K. (2012). Scientific Workflows to support in silico modeling in Cancer Research. 5th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation, Athens, Greece, October 22-23, 2012. 
• Roniotis, A., Sakkalis, V., Tzamali, E., Tzedakis, G., Zervakis, M.E., & Marias, K. (2012). Solving the PIHNA model while accounting for radiotherapy. 5th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation, Athens, Greece, October 22-23, 2012. 
• Tzamali, E., Sakkalis, V., & Marias, K. (2012). The effects of near optimal growth solutions in genome-scale human cancer metabolic model. 12th International Conference on BioInformatics and BioEngineering, Larnaca, Cyprus, November 11-13, 2012.  (pp. 626-631)
• Sakkalis, V., Sfakianakis, S.G., Marias, K., Stamatakos, G.S., Misichroni, F., Dionysiou, D.D., McKeever, S., Johnson, D., Deisboeck, T., & Graf, N. (2012). The TUMOR Project: Integrating Cancer Model Repositories for Supporting Predictive Oncology. 2nd Virtual Physiological Human Conference (VPH2012), London, UK, September 18-20, 2012. September 18-20
• Kouroubali, A., Adami, I., Foukarakis, M., Antona, M., & Stephanidis, C. (2012). Usability evaluation plan for advanced technology services for prevention and management of chronic conditions for the elderly. International Workshop on 'Advances in Personalized Healthcare Services, Wearable Mobile Monitoring, and Social Media Pervasive Technologies' (APHS 2012), in the context of MobiHealth 2012, 3rd International Conference on Wireless Mobile Communication and Healthcare. 21-23 November 2012, Paris, France
• Pediaditis, M., Tsiknakis, M.N., Koumakis, L., Karachaliou, M., Voutoufianakis, S., & Vorgia, P. (2012). Vision-Based Absence Seizure Detection. 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'12 San Diego, California, USA on August 28 - September 1, 2012. 
• Kornaropoulos, E.M., & Tollis, I.G. (2012). Weak Dominance Drawings for Directed Acyclic Graphs. International Symposium on Graph Drawing (GD 2012), Lecture Notes in Computer Science, Springer-Verlag. Springer-Verlag
• Manikis, G., Emmanouilidou, D., Sakkalis, V., Graf, N., & Marias, K. (2011). A Fully Automated Image Analysis Framework for Quantitative Assessment of Temporal Tumor Changes. IEEE INTERNATIONAL CONFERENCE ON E-HEALTH AND BIOENGINEERING ( EHB 2011 ), Iasi, Romania.. 
• Spat, S., Holl, B., Beck, B., Chiarugi, F., Kontogiannis, V., Spanakis, E.G., Manousos, D., & Pieber, T. (2011). A Mobile Android-based Application for in-hospital Glucose Management in compliance with the Medical Device Directive for Software. 2nd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2011), Kos Island, Greece, 5-7 October, 2011. 
• Martin, L., Anguita, A., Graf, N., Tsiknakis, M.N., Brochhausen, M., Ruping, S., Bucur, A., Sfakianakis, S.G., Sengstag, T., Buffa, F., & Stenzhorn, H. (2011). ACGT: Advancing Clinico-genomic trials on cancer - Four years of experience. MIE 2011, Oslo, Norway, August 2011, Stud Health Technol Inform.. 
• Manikis, G., Sakkalis, V., Zabulis, X., Karamaounas, P., Triantafyllou , A., Douma , S., Zamboulis, C., & Marias, K. (2011). An Image Analysis Framework for the Early Assessment of Hypertensive Retinopathy Signs . IEEE INTERNATIONAL CONFERENCE ON E-HEALTH AND BIOENGINEERING ( EHB 2011 ), Iasi, Romania.  Winner of Best Paper Award
• Marias, K., Stamatakos, G.S., Dionysiou, D.D., Sakkalis, V., Sfakianakis, S.G., & Tsiknakis, M.N. (2011). Computational Services for in silico Oncology: Experiences and Research Challenges. 7th GRACM International Congress on Computational Mechanics, Athens, Greece, 30 June – 2 July, 2011.. 
• Holl, B., Spat, S., Plank , J., Schaupp, L., Neubauer, K., Beck, B., Chiarugi, F., Kontogiannis, V., Pieber, T., & Holzinger, A. (2011). Design of a Mobile, Safety-Critical In-Hospital Glucose Management System. Stud Health Technol Inform, User Centred Networked Health Care,Proceedings of MIE 2011.  (pp. 950-954)
• Kouroubali, A., & Chiarugi, F. (2011). Developing advanced technology services for diabetes management: User preferences in Europe. 2nd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2011), Kos Island, Greece, 5-7 October, 2011. 
• Spanakis, E.G., & Chiarugi, F. (2011). Diabetes Management: Devices, ICT Technologies and Future Perspectives. 2nd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2011), Kos Island, Greece, 5-7 October, 2011. 
• Kartakis, S., Tourlakis, P., Sakkalis, V., Zacharioudakis, G., & Stephanidis, C. (2011). Enhancing the patient experience through Ambient Intelligence applications in health care. V International Symposium on Ubiquitous Computing and Ambient Intelligence (UCAmI’11), Riviera Maya (México), December 5-9, 2011. . 
• Yang, M., Chronaki, C., Lüpkes, C., Thiel, A., Plößnig, M., Hinterbuchner, L., Arbelo, E., Laleci, G., Duarte, F., Guillén, A., Navarro, X., Dogac, A., Eichelberg, M., & Hein, A. (2011). Guideline-Driven Telemonitoring & Follow-up of CIEDs using IEEE 11073, HL7 & IHE Profiles. In Proceedings of EMBC2011, Boston. 
• Koumakis, L., Potamias, G.A., Zervakis, M.E., & Moustakis, V.A. (2011). Integrating microarray data and gene regulatory networks: Survey and critical considerations. 10th International Workshop on Biomedical Engineering. Kos, Greece 5-7 October 2011. 
• Kondylakis, H., & Plexousakis, D. (2011). Ontology Evolution in Data Integration: Query Rewriting to the Rescue. 30th International Conference on Conceptual Modeling (ER 2011).  (pp. 393-401)
• Hristoskova, A., Sakkalis, V., Zacharioudakis, G., Tsiknakis, M.N., & De Turc, F. (2011). Ontology-driven Monitoring of Patient Vital Signs enabling Personalized Medical Detection and Alert. 2nd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2011), Kos Island, Greece, 5-7 October, 2011. 
• Kornaropoulos, E.M., & Tollis, I.G. (2011). Overloaded Orthogonal Drawings. 19th International Symposium on Graph Drawing(GD 2011). Eindhoven, The Netherlands.  (pp. 242-253). Springer-Verlag
• Koumakis, L., Chiarugi, F., Lagani, V., Kouroubali, A., & Tsamardinos, I. (2011). Risk Assessment Models for Diabetes Complications: a Survey of Available Online Tools. 2nd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2011), Kos Island, Greece, 5-7 October, 2011. 
• Bucur, A., Ruping, S., Sengstag, T., Sfakianakis, S.G., Tsiknakis, M.N., & Wegener, D. (2011). The ACGT project in retrospect: Lessons learned and future outlook. Procedia Computer Science, 4:1119 - 1128, 2011. Proceedings of the International Conference on Computational Science, ICCS 2011, Japan, June 2011. 
• Chronaki, C., Sfakianakis, S.G., Petrakis, Y., Charalambakis, G., Hinterbuchner, L., Radulescu, M., Mulrenin, B., Lüpkes, C., Eichelberg, M., Arbelo, E., Kabak, Y., Laleci, G., & Dogac, A. (2011). Tomorrow’s Integrated Care: Interoperability Testing in Guideline-driven Cardiac Telemonitoring. In Proceedigs of IHIC2011, Orlando Florida, May 2011. 
• Basdekis, I., Sakkalis, V., & Stephanidis, C. (2011). Towards an Accessible Personal Health Record. 2nd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2011), Kos Island, Greece, 5-7 October, 2011. 
• Lagani, V., Kontogiannis, V., Argyropaidas, P., & Chronaki, C. (2011). Use of SMS for Tsunami Ear ly War nings at a Table Top Exercise. eHealth2011, Malaga Spain, Nov 2011. 
• Lagani, V., Kontogiannis, V., Argyropaidas, P., & Chronaki, C. (2011). Use of SMS for Tsunami Early Warnings at a Table Top Exercise. 4th ICST International Conference on eHealth (eHealth 2011). November, Málaga, Spain
• Tsiknakis, M.N., Sfakianakis, S.G., Zacharioudakis, G., & Koumakis, L. (2010). A framework supporting sharing and reuse of data and tools in translational cancer research: Lessons learned for VPH research. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (IARWISO). September 2010, Athens, Greece
• Pelegris, P., Banitsas, K., Orbach, T., & Marias, K. (2010). A Novel Method to Detect Heart Beat Rate Using a Mobile Phone. 32nd IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2010). August 31-September 4, Buenos Aires, Argentina
• Martin, L., Anguita, A., Graf, N., Tsiknakis, M.N., Brochhausen, M., Rueping, S., Bucur, A., Sfakianakis, S.G., & Stenzhorn, H. (2010). ACGT: Advancing Clinico-genomic trials on cancer – Four years of experience. AMIA 2010 Annual Symposium, Washington DC. 13-15 November 2010, Washington DC
• Tsiknakis, M.N., & Spanakis, E.G. (2010). Adoption of innovative eHealth services in prehospital emergency management: a case study. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010).  Corfu, Greece
• Koumakis, L., Kanterakis, A., Potamias, G.A., Sfakianakis, S.G., Zacharioudakis, G., & Tsiknakis, M.N. (2010). Analyzing gene regulatory networks and gene expression profiles via scientific workflows. International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery. 7-9 July 2010, Chania, Greece
• Roniotis, A., Panourgias, K., Ekaterinaris, J., Marias, K., & Sakkalis, V. (2010). Approximating the diffusion – reaction equation for developing glioma models for the ContraCancrum Project: a showcase. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
• Farmaki, C., Mavrigiannakis, K., Marias, K., Zervakis, M.E., & Sakkalis, V. (2010). Assessment of Automated Brain Structures Segmentation based on the Mean-shift Algorithm: Application in Brain Tumor. ITAB2010. November 2-5, Corfu, Greece
• Marias, K. (2010). Clinically Oriented Translational Cancer Multilevel Modelling. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
• Roniotis, A., Marias, K., Sakkalis, V., & Stamatakos, G.S. (2010). Comparing Finite Element and Finite Difference Techniques as Applied to the Development of Diffusive Models of Glioblastoma Multiforme Growth. 32nd IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2010). August 31-September 4, 2010, Buenos Aires, Argentina
• Marias, K. (2010). ContraCancrum: Clinically Oriented Translational Cancer Multilevel Modelling. International VPH Conferences (VPH2010). September 30-October 1, Brussels, Belgium
• Tsiaras, V., & Tollis, I.G. (2010). DAGmaps and Dominance Relationships. Lecture Notes in Computer Science.  (pp. 424-425)
• Tollis, I.G., & Tsiaras, V. (2010). DAGmaps and ε-Visibility Representations of DAGs. Lecture Notes in Computer Science.  (pp. 357-368)
• Sakkalis, V., Tsiaras, V., Zervakis, M.E., & Tollis, I.G. (2010). EEG Biomarker identification using Graph Theoretic concepts. International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery. July 7-9, Chania, Greece
• Grigonyte, G., Brochhausen, M., Martin, L., Tsiknakis, M.N., & Haller, J. (2010). Evaluating Ontologies with NLP-Based Terminologies – A Case Study on ACGT and Its Master Ontology. 6th International Conference on Formal Ontology in Information Systems (FOIS). May 11-14, Toronto, Canada
• Sakkalis, V., Roniotis, A., Farmaki, C., Karatzanis, I., & Marias, K. (2010). Evaluation framework for the multilevel macroscopic models of solid tumor growth in the glioma case. 32nd IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2010). August 31-September 4, 2010, Buenos Aires, Argentina
• Roniotis, A., Sakkalis, V., Stamatakos, G.S., Zervakis, M.E., & Marias, K. (2010). Glioma diffusive modeling: Calculating diffusion coefficients from atlases with proportional tissue information. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
• Roniotis, A., Marias, K., Sakkalis, V., Skounakis, E., & Zervakis, M.E. (2010). Incorporating different proliferation rates in glioma modeling using vectorization operators. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
• Sfakianakis, S.G., Zervakis, M.E., Tsiknakis, M.N., & Kafetzopoulos, D. (2010). Integration of Biological Knowledge in the Mixture-of-Gaussians Analysis of Genomic Clustering. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010). Nov 2010, Corfu, Greece
• Chronaki, C., Kontogiannis, V., Panagopoulos, D., Katehakis, D.G., Vourvahakis, D., & Koutentaki-Mountraki, K. (2010). Interoperability in Disaster Medicine and Emergency Management. in IHIC2010. Rio de Janeiro, Brazil
• Triantafullou, S., Tsamardinos, I., & Tollis, I.G. (2010). Learning Causal Structure from Overlapping Variable Sets. in Y.W. Teh and M. Titterington (Eds.), Proceedings of The Thirteenth International Conference on Artificial Intelligence and Statistics (AISTATS). May 13-15, Chia Laguna, Sardinia, Italy. (pp. 860-867)
• Moustakis, V.A., Laine, M., Koumakis, L., Loos, B.G., & Potamias, G.A. (2010). Modeling and Validating Genotype Knowledge: the Case of Periodontal Disease. Cairo International Conference on Biomedical Engineering (CIBEC 2010). 
• Laine, M., Moustakis, V.A., Koumakis, L., Potamias, G.A., & Loos, B.G. (2010). Modeling susceptibility to periodontitis. International and American Association for Dental Research (IARD) General Session 2010. Barcelona Spain July 14-17. 
• Kanterakis, A., Zacharioudakis, G., Koumakis, L., Potamias, G.A., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: A scenario for the coupling of molecular regulatory pathways and gene-expression profiles. 13th International Congress on Medical Informatics (MEDINFO 2010). 12 - 15 of September 2010, South Africa
• Stamatakos, G.S., Dionysiou, D.D., Kolokotroni, E., Georgiadi, E., Giatili, S., Hoppe, A., Desmedt, C., Lunzer, A., Erdt, M., Jacques, J., Puckacki, J., Belleman, R., Melis, P., d Onofrio, A., Buffa, F., Claerhout, B., Rueping, S., Marias, K., Tsiknakis, M.N., & Graf, N. (2010). The ACGT Oncosimulator: from Conceptualization Towards Development via Multiscale Cancer Modeling. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
• Stamatakos, G.S., Dionysiou, D.D., Giatili, S., Kolokotroni, E., Georgiadi, E., Roniotis, A., Sakkalis, V., Coveney, P.V., Shunzhu, W., Steven, M., Zasada, St., Folarin, A., Büchler, P., Tibault, B., Bauer, St., Reyes, M., Bily, T., Bednar, V., Karasek, M., Graf, N., Bohle, R., Meese, E., Yoo-Jin, K., Stenzhorn, H., Clapworthy, G., & Liu, E. (2010). The ContraCancrum Oncosimulator: Integrating Biomechanisms Across Scales in the Clinical Context. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
• Stenzhorn, H., Weiler, G., Brochhausen, M., Schera, F., Kritsotakis, V., Tsiknakis, M.N., Kiefer, S., & Graf, N. (2010). The ObTiMA System – Ontology-based Managing of Clinical Trials. 13th International Congress on Medical Informatics (MEDINFO 2010). 12 - 15 of September 2010, South Africa
• Zepp, J., Graf, N., Skounakis, E., Bohle, R., Meese, E., Stenzhorn, H., Yoo-Jin, K., Farmaki, C., Sakkalis, V., Reith, W., Stamatakos, G.S., & Marias, K. (2010). Tumor segmentation: The impact of standardized signal intensity histograms in glioblastoma. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation. September 8-9, Athens, Greece
• Pediaditis, M., Tsiknakis, M.N., Vorgia, P., Kafetzopoulos, D., Danilatou, V., & Fotiadis, D.I. (2010). Vision-Based Human Motion Analysis in Epilepsy – Methods and Challenges. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010). Nov 2010, Corfu, Greece
• Roniotis, A., Marias, K., Sakkalis, V., Tsibidis, G.D., & Zervakis, M.E. (2009). A complete mathematical study of a 3D model of heterogeneous and anisotropic glioma evolution. In Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society.  (pp. 2807-2810). United States (1557-170X; 1557-170X)
• Colantonio, S., Martinelli, M., Moroni, D., Salvetti, O., Chiarugi, F., & Emmanouilidou, D. (2009). A decision support system for aiding heart failure management. 9th International Conference on Intelligent Systems Design and Applications, ISDA 2009. 30 November 2009 through 2 December 2009, Pisa. (pp. 351-356) (9780769538723 (ISBN))
• Meriggi, P., Rizzo, F., Faini, A., Chiarugi, F., Karatzanis, I., Zacharioudakis, G., Valentini, M., Parati, G., Castiglioni, P., & Di Rienzo, M. (2009). A new simple multimodal platform for home monitoring of cardiac patients through textile technology. Computers in Cardiology, 2009 .  (pp. 93-96)
• Zacharioudakis, G., Koumakis, L., Sfakianakis, S.G., & Tsiknakis, M.N. (2009). A semantic infrastructure for the integration of bioinformatics services. 9th International Conference on Intelligent Systems Design and Applications, ISDA 2009. 30 November 2009 through 2 December 2009, Pisa. (pp. 367-372) (9780769538723 (ISBN))
• Tsiknakis, M.N., Sfakianakis, S.G., Zacharioudakis, G., Koumakis, L., Kanterakis, A., Potamias, G.A., & Kafetzopoulos, D. (2009). A semantically aware platform for the authoring and secure enactment of bioinformatics workflows. 31st Annual International IEEE EMBS Conference (EMBC2009). September, 2-6, 2009, Hilton Minneapolis, Minnesota, USA. 
• Farmaki, C., Marias, K., Sakkalis, V., & Graf, N. (2009). A spatially adaptive active contour method for improving semi-automatic medical image annotation. World Congress on Medical Physics and Biomedical Engineering. 7-12 September, (pp. 1878-1881) (1680-0737)
• Potamias, G.A., & Moustakis, V.A. (2009). BMIINT Editorial. Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications {&} Innovations(AIAI-2009). April 23-25, Thessaloniki, Greece. (pp. 1-3)
• Tsiaras, V., Tollis, I.G., & Sakkalis, V. (2009). Brain network analyzer. 16th International Symposium on Graph Drawing, GD 2008. 21 September 2008 through 24 September 2008, Heraklion, Crete. (pp. 451-452) (03029743; 3642002188 (ISBN); 9783642002182 (ISBN))
• Tsiaras, V., Andreou, D., & Tollis, I.G. (2009). BrainNetVis: analysis and visualization of brain functional networks.. In 31th Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2009). Minnesota, USA. (pp. 2911-2914) (1557170X)
• Sfakianakis, S.G., Graf, N., Hoppe, A., Rüping, S., Wegener, D., Koumakis, L., & Zacharioudakis, G. (2009). Building a system for advancing clinico-genomic trials on cancer. Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations(AIAI-2009), Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT). April 23-25, http://www.scientificcommons.org/48955097. Thessaloniki, Greece: Fraunhofer EPrints [http://publica.fraunhofer.de/eprints.har] (Germany)
• Sakkalis, V., Marias, K., & Stamatakos, G.S. (2009). Clinical data driven in silico tumor growth and therapy modeling. IN Proceedings of Mining in Biomedicine (DMINBIO '09). 7-8 May, Athens, Greece
• Marias, K., Sakkalis, V., Roniotis, A., Farmaki, C., Stamatakos, G.S., Dionysiou, D.D., Giatili, S., Uzunoglu, N.K., Graf, N., Bohle, R., Messe, E., Coveney, P.V., Manos, S., Wan, S., Folarin, A., Nagl, S., Büchler, P., Bardyn, T., Reyes, M., Clapworthy, G., Mcfarlane, N., Liu, E., Bily, T., Balek, M., Karasek, M., Bednar, V., & Sabczynski,  (2009). Clinically Oriented Translational Cancer Multilevel Modeling: The ContraCancrum Project. World Congress on Medical Physics and Biomedical Engineering. September 7-12, Munich, Germany. (pp. 2124-2127)
• Tsiaras, V., & Tollis, I.G. (2009). DAGmap view. 16th International Symposium, GD 2008. 21 September 2008 through 24 September 2008, Heraklion, Crete. (pp. 449-450) (03029743; 3642002188 (ISBN); 9783642002182 (ISBN))
• Tsiaras, V., & Tollis, I.G. (2009). DAGmaps and Dominance Relationships. Graph Drawing, 17th International Symposium, GD 2009. September 22-25, Chicago,L, USA. (pp. 424-425) (978-3-642-11804-3)
• Tsiaras, V., & Tollis, I.G. (2009). DAGmaps and epsilon-Visibility Representations of DAGs. Graph Drawing, 17th International Symposium, GD 2009. September 22-25, Chicago,L, USA. (pp. 357-368) (978-3-642-11804-3)
• Iordanidou, V., Michalopoulos, K., Sakkalis, V., & Zervakis, M.E. (2009). Decomposition methods for detailed analysis of content in ERP recordings. 19th International Conference on Artificial Neural Networks, ICANN 2009. 14 September 2009 through 17 September 2009, Limassol. (pp. 368-377) (03029743; 3642042767 (ISBN); 9783642042768 (ISBN))
• Koumakis, L., Sfakianakis, S.G., Moustakis, V.A., & Potamias, G.A. (2009). Discovery of Genotype-to-Phenotype Associations: A Grid-enabled Scientific Workflow Setting. Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations(AIAI-2009), Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT). April 23-25, http://www.scientificcommons.org/48955097. Thessaloniki, Greece: Fraunhofer EPrints [http://publica.fraunhofer.de/eprints.har] (Germany)
• Skounakis, E., Sakkalis, V., Marias, K., Banitsas, K., & Graf, N. (2009). DoctorEye: A multifunctional open platform for fast annotation and visualization of tumors in medical images. In the Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society.  (pp. 3759-3762). United States (1557-170X; 1557-170X)
• Chiesa, S., Iglesia, D.D.E.L.A., Crespo, J., Martin-Sanchez, F., Kern, J., Potamias, G.A., & Maojo, V. (2009). European efforts in nanoinformatics research applied to nanomedicine. 22nd International Conference on Medical Informatics Europe, MIE 2009. 30 August 2009 through 2 September 2009, Sarajevo. (pp. 757-761) (09269630; 9781607500445 (ISBN))
• Blobel, B., Chronaki, C., Stegwee, R., Grain, H., Hammond, W.E., Jaffe, C., Kalra, D., Koehn, M., Macary, F., Sabutsch, S., Sheetham, E., Schulz, S., & Tan, M. (2009). HL7"s comprehensive standards set and its international collaboration for enabling semantically interoperable eHealth and pHealth solutions. 22nd International Conference on Medical Informatics Europe, MIE 2009. 30 August 2009 through 2 September 2009, Sarajevo. (pp. 982-986) (09269630; 9781607500445 (ISBN))
• Tsiliki, G., Zervakis, M.E., Ioannou, M., Sanidas, E., Stathopoulos, E., Tsiknakis, M.N., & Kafetzopoulos, D. (2009). Multi-platform data integration in microarray analysis. 9th International Conference on Information Technology and Applications in Biomedicine, ITAB 2009. 4 November 2009 through 7 November 2009, Larnaca (9781424453795 (ISBN))
• De La Iglesia, D., Chiesa, S., Kern, J., Maojo, V., Martin-Sanchez, F., Potamias, G.A., Moustakis, V.A., & Mitchell, J.A. (2009). Nanoinformatics: New challenges for Biomedical Informatics at the Nano level. 22nd International Conference on Medical Informatics Europe, MIE 2009. 30 August 2009 through 2 September 2009, Sarajevo. (pp. 987-991) (09269630; 9781607500445 (ISBN))
• Spanakis, E.G., Traganitis, A.P., & Ephremides, A. (2009). Rate Region and Power Considerations in a simple 2x2 Interference Channel. Information Theory Workshop on Networking and Information Theory, (ITW 2009), Volos, Greece. 
• Kanterakis, A., Moustakis, V.A., Kafetzopoulos, D., & Potamias, G.A. (2009). Revealing Disease Mechanisms via Coupling Molecular Pathways Scaffolds and Microarrays: A Study on the Wilms Tumor Disease. Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications {&} Innovations (AIAI-2009). April 23-25, Thessaloniki, Greece. (pp. 88-99)
• Trigo, J.D., Chiarugi, F., Alesanco, Á., Martínez-Espronceda, M., Serrano, L., Chronaki, C., Escayola, J., Martínez, I., & García, J. (2009). SCP-ECG in an ISO/IEEE 11073-PHD world: Store-and-forward transmission and messaging part. 9th International Conference on Information Technology and Applications in Biomedicine, ITAB 2009. 4 November 2009 through 7 November 2009, Larnaca (9781424453795 (ISBN))
• Trigo, J.D., Chiarugi, F., Alesanco, Á., Martínez-Espronceda, M., Chronaki, C., Escayola, J., Martínez, I., & García, J. (2009). Standard-Compliant Real-Time Transmission of ECGs: Harmonization of ISO/IEEE 11073-PHD and SCP-ECG. EMBC 2009, Minneapolis, MN, USA, September 2009. 
• Koumakis, L., Moustakis, V.A., Tsiknakis, M.N., Kafetzopoulos, D., & Potamias, G.A. (2009). Supporting Genotype-To-Phenotype Association Studies with Grid-Enabled Knowledge Discovery Workflows. 31st Annual International IEEE EMBS Conference (EMBC2009). September, 2-6, 2009, Hilton Minneapolis, Minnesota, USA. 
• Roniotis, A., Marias, K., Sakkalis, V., Karatzanis, I., & Zervakis, M.E. (2009). The mathematical path to develop a heterogeneous, anisotropic and 3-dimensional glioma model using finite differences. 9th International Conference on Information Technology and Applications in Biomedicine, ITAB 2009. 4 November 2009 through 7 November 2009, Larnaca (9781424453795 (ISBN))
• Sakkalis, V., Marias, K., Roniotis, A., & Skounakis, E. (2009). Translating cancer research into clinical practice: A framework for analyzing and modeling cancer from imaging data. 9th International Conference on Intelligent Systems Design and Applications, ISDA 2009. 30 November 2009 through 2 December 2009, Pisa. (pp. 347-350) (9780769538723 (ISBN))
• Sciacqua, A., Valentini, M., Gualtieri, A., Perticone, F., Faini, A., Zacharioudakis, G., Karatzanis, I., Chiarugi, F., Assimakopoulou, C., Meriggi, P., Di Rienzo, M., & Parati, G. (2009). Validation of a flexible and innovative platform for the home monitoring of heart failure patients: Preliminary results. Computers in Cardiology, 2009.  (pp. 97-100)
• Sfakianakis, S.G., Koumakis, L., Zacharioudakis, G., & Tsiknakis, M.N. (2009). Web-based authoring and secure enactment of bioinformatics workflows. 2009 Workshops at the Grid and Pervasive Computing Conference, GPC 2009. 4 May 2009 through 8 May 2009, Geneva. (pp. 88-95) (9780769536774 (ISBN))
• Andersson, M., Sakkalis, V., Ripoll, J., Ntziachristos, V., & Marias, K. (2008). 3D multi-modal registration for assessing molecular activity changes in time-dependent geometries. Engineering in Medicine and Biology Society, 2008. EMBS 2008. 30th Annual International Conference of the IEEE.  (pp. 3975-3978) (1557-170X)
• Tsiliki, G., Kaforou, S., Kapsetaki, M., Potamias, G.A., & Kafetzopoulos, D. (2008). A computational approach to microarray universal reference sample. 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 8 October 2008 through 10 October 2008, Athens (9781424428458 (ISBN))
• Christodoulou, E., Ioannou, M., Kafousi, M., Sanidas, E., Papagiannakis, G., Danilatou, V., Tsiliki, G., Margaritis, Th., Kondylakis, H., Manakanatas, D., Koumakis, L., Kanterakis, A., Vassilaros, S., Tsiknakis, M.N., Analyti, A., Potamias, G.A., Tsiftsis, D., Stathopoulos, E., & Kafetzopoulos, D. (2008). A new gene expression signature related to breast cancer estrogen receptor status. BIBE 2008. 8th IEEE International Conference on BioInformatics and BioEngineering. October, Greece. (pp. 1-7) (pdf)
• Tsiknakis, M.N., Sfakianakis, S.G., Rueping, S., Trelles, O., Siestang, Th., Claerhout, B., & Virvilis, V. (2008). A semantic grid services architecture in support of efficient knowledge discovery from multilevel clinical and genomic datasets. 1st International Conference on Health Informatics, HEALTHINF 2008. 28 January 2008 through 31 January 2008, Funchal, Madeira. (pp. 279-287) (9789898111166 (ISBN))
• Di Bona, S., Guerri, D., Lettere, M., Fontanelli, R., Chiarugi, F., Marsh, A., & Salvetti, O. (2008). An Integrated and Interoperable Platform of Services for the Management of Heart Failure. IHIC 2008, Hersonissos, Crete, Greece, October 2008. 
• Kalaitzakis, M., Kritsotakis, V., Kondylakis, H., Potamias, G.A., Tsiknakis, M.N., & Kafetzopoulos, D. (2008). An Integrated Clinico-Proteomics Information Management and Analysis Platform. Proceedings of the Twenty-First IEEE International Symposium on Computer-Based Medical Systems. June 17-19, Finland. (pp. 218-220) (pdf)
• Anguita, A., Martin, L., Crespo, J., & Tsiknakis, M.N. (2008). An ontology based method to solve query identifier heterogeneity in post-genomic clinical trials.  (pp. 3-8) (09269630)
• Brochhausen, M., Weiler, G., Martin, L., Cocos, C., Stenzhorn, H., Graf, N., Doerr, M., Tsiknakis, M.N., & Smith, B. (2008). Applications of the ACGT Master Ontology on Cancer. OTM Workshops. 9-14th November, Monterrey, Mexico. (pp. 1046-1055)
• Sakkalis, V., Tsiaras, V., Michalopoulos, K., & Zervakis, M.E. (2008). Assessment of neural dynamic coupling and causal interactions between independent EEG components from cognitive tasks using linear and nonlinear methods. Engineering in Medicine and Biology Society, 2008. EMBS 2008. 30th Annual International Conference of the IEEE. 20-25 August, (pp. 3767-3770) (1557-170X)
• Chiarugi, F., Colantonio, S., Emmanouilidou, D., Moroni, D., & Salvetti, O. (2008). Biomedical Signal and Image Processing for Decision Support in Heart Failure. “MDA 2008”, Lecture Notes on Computer Science. July 14, Leipzig, Germany. (pp. 38-51)
• Schlögl, A., Vidaurre, C., Hofer, E., Wiener, Th., Brunner, C., Scherer, R., & Chiarugi, F. (2008). BIOSIG - Standardization and Quality Control in Biomedical Signal Processing Using the BioSig Project. BIOSIGNALS (2). January 28-31, Funchal, Madeira, Portugal. (pp. 403-409)
• Colantonio, S., Martinelli, M., Moroni, D., Salvetti, O., Perticone, F., Sciacqua, A., Chiarugi, F., Conforti, D., Gualtieri, A., & Lagani, V. (2008). Decision support and image & signal analysis in heart failure - A comprehensive use case. 1st International Conference on Health Informatics, HEALTHINF 2008. 28 January 2008 through 31 January 2008, Funchal, Madeira. (pp. 288-295) (9789898111166 (ISBN))
• Chiarugi, F., Colantonio, S., Emmanouilidou, D., Moroni, D., Perticone, F., Sciacqua, A., & Salvetti, O. (2008). ECG and echocardiography processing for decision support in heart failure. Computers in Cardiology 2008, CAR. 14 September 2008 through 17 September 2008, Bologna. (pp. 649-652) (02766574; 1424437067 (ISBN); 9781424437061 (ISBN))
• Chronaki, C., Roumeliotaki, T., Bujnowska-Fedak, M., & Staniszewski, A. (2008). eHealth Consumer Attitudes in Poland & Greece: a Comparison. in Proceedings of eChallenges Conference. 21-24 October, Stockholm
• Moustakis, V.A., Potamias, G.A., Laine, M., Loos, B.G., & Koumakis, L. (2008). Linking Genetic Susceptibility with Clinical Findings: a case study in periodontitis. 40th European Human Genetics Conference (ESHG 2008), Barcelona, 31 May 2008 - 3 June 2008.. 
• Pérez-Pérez, M.M., Kaforou, S., Mery, S., Brunet-Errand, L., Paulus, C., Kritsotakis, M., Gerfault, L., Reina, C., Kafetzopoulos, D., Potamias, G.A., Ricoul, F., Tsiknakis, M.N., Schnekenburger, J., & Grangeat, P. (2008). LOCCANDIA: Lab-on-Chip Based Protein Profiling for Cancer Diagnosis. 5th pHealth Workshop on wearable micro and nano systems for personalised health "from research into practice". 21-23 May, Valencia, Spain
• Darrell, A., Meyer, H., Birk, U., Marias, K., Brady, M.J., & Ripoll, J. (2008). Maximum likelihood reconstruction for fluorescence Optical Projection Tomography. BIBE.  (pp. 1-6)
• Chiarugi, F., Karatzanis, I., Zacharioudakis, G., Meriggi, P., Rizzo, F., Stratakis, M., Louloudakis, S., Biniaris, C., Valentini, M., Di Rienzo, M., & Parati, G. (2008). Measurement of heart rate and respiratory rate using a textile-based wearable device in heart failure patients. Computers in Cardiology 2008, CAR. 14 September 2008 through 17 September 2008, Bologna. (pp. 901-904) (02766574; 1424437067 (ISBN); 9781424437061 (ISBN))
• Kanterakis, A., Kafetzopoulos, D., Moustakis, V.A., & Potamias, G.A. (2008). Mining gene expression profiles and gene regulatory networks: Identification of phenotype-specific molecular mechanisms. 5th Hellenic Conference on Artificial Intelligence, SETN 2008. 2 October 2008 through 4 October 2008, Syros. (pp. 97-109) (03029743; 3540878807 (ISBN); 9783540878803 (ISBN))
• Chiarugi, F., Emmanouilidou, D., Tsamardinos, I., & Tollis, I.G. (2008). Morphological classification of heartbeats using similarity features and a two-phase decision tree. Computers in Cardiology 2008, CAR. 14 September 2008 through 17 September 2008, Bologna. (pp. 849-852) (02766574; 1424437067 (ISBN); 9781424437061 (ISBN))
• Darrell, A., Marias, K., Brady, M.J., Meyer, H., Birk, U., & Ripoll, J. (2008). Noise reduction in fluorescence Optical Projection Tomography. IEEE Workshop on Imaging Systems and Techniques, IST 2008. 10 September 2008 through 12 September 2008, Chania, Crete. (pp. 56-59) (9781424424979 (ISBN))
• Martin, L., Anguita, A., Maojo, V., Bonsma, E., Bucur, A., Vrijnsen, J., Brochhausen, M., Cocos, C., Stenzhorn, H., Tsiknakis, M.N., Doerr, M., & Kondylakis, H. (2008). Ontology based integration of distributed and heterogeneous data sources in ACGT. 1st International Conference on Health Informatics, HEALTHINF 2008. 28 January 2008 through 31 January 2008, Funchal, Madeira. (pp. 301-306) (9789898111166 (ISBN)) (pdf)
• Zervakis, M.E., Blazadonakis, M.E., Banti, A., Kafetzopoulos, D., Danilatou, V., & Tsiknakis, M.N. (2008). Performance validation of microarray analysis methods. Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2008. October 8-10, Athens, Greece. (pp. 1-6)
• Kalaitzakis, M., Kritsotakis, V., Grangeat, P., Paulus, C., Gerfault, L., Perez, M., Reina, C., Potamias, G.A., Tsiknakis, M.N., Kafetzopoulos, D., & Binz, P.A. (2008). Proteomic based identification of cancer biomarkers: The LOCCANDIA integrated platform. BioInformatics and BioEngineering, 2008. In proceedings of the 8th IEEE International Conference on BioInformatics and BioEngineering (IEEE BIBE 2008). 8-10 October, Athens, Greece. (pp. 1-7)
• Chronaki, C., Berthier, A., Kontogiannis, V., Matsakis, Y., Lleo, M.M., Gikas, A., Kritsotakis, E., & Braak, L. (2008). Satellite-enabled applications for health early warning in public health after a disaster: experience from a readiness exercise. in Proceedings of eChallenges Conference. 21-24 October, Stockholm
• Chronaki, C., Kontogiannis, V., Charalambous, E., Vrouchos, G., Mamantopoulos, A., & Vourvahakis, D. (2008). Satellite-enabled eHealth applications in disaster management-experience from a readiness exercise. Computers in Cardiology 2008, CAR. 14 September 2008 through 17 September 2008, Bologna. (pp. 1005-1008) (02766574; 1424437067 (ISBN); 9781424437061 (ISBN))
• Brochhausen, M., Weiler, G., Cocos, C., Stenzhorn, H., Graf, N., Doerr, M., & Tsiknakis, M.N. (2008). The ACGT Master Ontology on Cancer A New Terminology Source for Oncological Practice. CBMS. June 17-19, Jyväskylä, Finland. (pp. 324-329) (pdf)
• Tsiknakis, M.N. (2008). The european cancer informatics landscape: Challenges for the biomedical informatics community. 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 8 October 2008 through 10 October 2008, Athens (9781424428458 (ISBN))
• Tsiaras, V., Triantafulou, S., & Tollis, I.G. (2008). Treemaps for directed acyclic graphs. Graph Drawing. In the Proceedings of the 15th International Symposium on Graph Drawing, GD 2007. 24 September 2007 through 26 September 2007, Sydney. (pp. 377-388). Berlin / Heidelberg: Springer (03029743; 3540775366 (ISBN); 9783540775362 (ISBN))
• Chronaki, C., Berthier, A., Lleo, M.M., Esterle, L., Lenglet, A., Simon, F., Josseran, L., Lafaye, M., Matsakis, Y., Tabasco, A., & Braak, L. (2007). A satellite infrastructure for health early warning in post-disaster health management. In proceedings of MEDinfo 2007. 20-24 August, Brisbane Australia. (pp. 87-91). Netherlands (0926-9630)
• Tsiknakis, M.N., Sfakianakis, S.G., Potamias, G.A., Zacharioudakis, G., & Kafetzopoulos, D. (2007). A semantic grid infrastructure enabling integrated access and knowledge discovery from multilevel data in post-genomic clinical trials. July, Sheffield, U.K.Springer (978-1-84628-990-3)
• Chiarugi, F., Sakkalis, V., Emmanouilidou, D., Krontiris, T., Varanini, M., & Tollis, I.G. (2007). Adaptive threshold QRS detector with best channel selection based on a noise rating system. Proc. of Computers in Cardiology.  (pp. 157-160)
• Conforti, D., Perticone, F., Parati, G., Kawecka-Jaszcz, K., Marsh, A., Stratakis, M., Di Bona, S., Salvetti, O., Chiarugi, F., Gamberger, D., & Valentini, M. (2007). Advanced Technological Support to Better Care of Chronic Heart Failure Patients: the FP6 European Project HEARTFAID. @ITIM 2007, Bari, Italy, December 2007. 
• Martin, L., Bonsma, E., Anguita, A., Vrijnsen, J., Garcia-Remesal, M., Crespo, J., Tsiknakis, M.N., & Maojo, V. (2007). Data Access and Management in ACGT: Tools to Solve Syntactic and Semantic Heterogeneities Between Clinical and Image Databases. Advances in Conceptual Modeling - Foundations and Applications, Advances in Conceptual Modeling - Foundations and Applications. November 5-9, Auckland, New Zealand. (pp. 24-33)
• Chronaki, C., Kontogiannis, V., Mytaras, M., Aggourakis, N., Kostomanolakis, S.G., Roumeliotaki, T., Kavlentakis, G., Chiarugi, F., & Tsiknakis, M.N. (2007). Evaluation of Shared EHR Services in Primary Healthcare Centers and their Rural Community Offices: the Twister Story. Engineering in Medicine and Biology Society, 2007. EMBS 2007. 29th Annual International Conference of the IEEE.  (pp. 6421-6424) (1557-170X)
• Ruping, S., Sfakianakis, S.G., & Tsiknakis, M.N. (2007). Extending workflow management for knowledge discovery in clinico-genomic data. In Proceedings of the HealthGrid 2007 Conference. 24-27 April, Geneva, Switzerland. (pp. 184-193). Netherlands (0926-9630)
• Tsiknakis, M.N., Grangeat, P., Binz, P.A., Potamias, G.A., Lisacek, F., Gerfault, L., Paulus, C., Manakanatas, D., Kritsotakis, V., Kondylakis, H., Perez, M., Plexousakis, D., Kaforou, S., & Kafetzopoulos, D. (2007). Functional specifications of an integrated proteomics information management and analysis platform.. Conf Proc IEEE Eng Med Biol Soc.  (pp. 6065-6069) (1557170X)
• Wegener, D., Sengstag, T., Sfakianakis, S.G., Ruping, S., & Assi, A. (2007). GridR: An R-Based Grid-Enabled Tool for Data Analysis in ACGT Clinico-Genomics Trials. e-Science and Grid Computing, IEEE International Conference on e-Science and Grid Computing. Bangalore, India. (pp. 228-235)
• Tsiknakis, M.N., Sfakianakis, S.G., Potamias, G.A., & Kafetzopoulos, D. (2007). Integration of heterogeneous, multilevel biomedical data: Semantic Grid services enabling integrated access, analysis and knowledge discovery in the context of multicentric, post-genomic clinical trials. In Proceedings of the 9th International Conference on Enterprise Information Systems. 12-16 June, Funchal, Madeira – Portugal
• Potamias, G.A., Koumakis, L., Kanterakis, A., Sfakianakis, S.G., Analyti, A., Moustakis, V.A., Kafetzopoulos, D., Ruping, S., & Tsiknakis, M.N. (2007). Knowledge Discovery Scientific Workflows in Clinico-Genomics. In Proceedings of the19th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 07). 29-31 October, Patras, Greece. (pp. 91-95). IEEE Computer Society
• Papaefstathiou, I., & Papaefstathiou, V. (2007). Memory-Efficient 5D Packet Classification At 40 Gbps. INFOCOM 2007. 26th IEEE International Conference on Computer Communications. IEEE. 6-12 may, Anchorage Alaska, USA. (pp. 1370-1378) (0743-166X)
• Moustakis, V.A., Laine, M., Koumakis, L., Potamias, G.A., Zampetakis, L.A., & Loos, B.G. (2007). Modeling Genetic Susceptibility: a case study in periodontitis. Intelligent Data Analysis in bioMedicine And Pharmacology (IDAMAP2007) Amsterdam July 8, 2007. 
• Marias, K., Dionysiou, D.D., Stamatakos, G.S., Zacharopoulou, F., Georgiadi, E., Margaritis, Th., Maris, Th.G., & Tollis, I.G. (2007). Multi-level analysis and information extraction considerations for validating 4D models of human function. 1st International Conference on Digital Human Modeling, ICDHM 2007. 22 July 2007 through 27 July 2007, Beijing. (pp. 703-709) (03029743; 9783540733188 (ISBN))
• Chronaki, C., Chiarugi, F., & Fischer, R. (2007). OpenECG: Promoting Interoperability through the Consistent Implementation of the SCP-ECG Standard in Electrocardiography. In: Medinfo 2007: Proceedings of the 12th World Congress on Health (Medical) Informatics; Building Sustainable Health Systems. August 20 - 24, 2007, Southbank Brisbane, Australia. (9781586037741)
• Sakkalis, V., Tsiaras, V., Zervakis, M.E., & Tollis, I.G. (2007). Optimal brain network synchrony visualization: Application in an alcoholism paradigm. 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC '07. 23 August 2007 through 26 August 2007, Lyon. (pp. 4285-4288) (05891019; 1424407885 (ISBN); 9781424407880 (ISBN))
• Papamanthou, Ch., & Tollis, I.G. (2007). Parameterized st-orientations of graphs: Algorithms and experiments. Graph Drawing.14th International Symposium on Graph Drawing, GD 2006 . 18 September 2006 through 19 September 2006, Karlsruhe, Geramany. (pp. 220-233). Berlin / Heidelberg: Springer (03029743; 9783540709039 (ISBN))
• Martin, L., Anguita, A., De la Calle, G., Garcia-Remesal, M., Crespo, J., Tsiknakis, M.N., & Maojo, V. (2007). Semantic data integration in the European ACGT project.. In Proceedings of the American Medical Informatics Association (AMIA) Annual Symposium. 11-14 November, Chicago, IL (USA). (pp. 1042) (15594076)
• Dionysiou, D.D., Stamatakos, G.S., & Marias, K. (2007). Simulating cancer radiotherapy on a multi-level basis: Biology, oncology and image processing. 1st International Conference on Digital Human Modeling, ICDHM 2007. 22 July 2007 through 27 July 2007, Beijing. (pp. 569-575) (03029743; 9783540733188 (ISBN))
• Anguita, A., Martin, L., Crespo, J., Tsiknakis, M.N., & Maojo, V. (2007). Solving semantic heterogeneities and integration between clinical and image databases in post-genomic clinical trials. in Proceedings of the Personalised Healthcare (phealth2007) Conference (sponsored by the IEEE Engineering in Medicine and Biology Society (EMBS). June, Chalkidiki, Greece
• Aguirre, M.R., Linguraru, M.G., Marias, K., Ayache, N., Nolte, L.P., & Ballester, M.A.G. (2007). Statistical shape analysis via principal factor analysis. 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro; ISBI '07. 12 April 2007 through 15 April 2007, Arlington, VA. (pp. 1216-1219) (1424406722 (ISBN); 9781424406722 (ISBN))
• Stamatakos, G.S., Dionysiou, D.D., Graf, N., Sofra, N.A., Desmedt, C., Hoppe, A., Uzunoglu, N.K., & Tsiknakis, M.N. (2007). The "Oncosimulator": a multilevel, clinically oriented simulation system of tumor growth and organism response to therapeutic schemes. Towards the clinical evaluation of in silico oncology. In Proceedings of the IEEE Engineering in Medicine and Biology Conference (EMBC 2007). August, Lyon, France. (pp. 6629-6632) (1557170X)
• Potamias, G.A., Tsiknakis, M.N., Kafetzopoulos, D., Pérez-Pérez, M.M., Jordan, B., Binz, P.A., Lisacek, F., Kritsotakis, V., Manakanatas, D., Kondylakis, H., Kalaitzakis, M., Gerfault, L., Paulus, C., & Grangeat, P. (2007). The Loccandia Integrated Clinico-Proteomics Environment. In Proceedings of the 5th International Conference on Instrumental Methods of Analysis - Modern Trends and Applications (IMA '07). 30 September - 4 October, Rio, Patras, Greece
• Schlögl, A., Chiarugi, F., Cervesato, E., Apostolopoulos, E., & Chronaki, C. (2007). Two-way converter between the HL7 aECG and SCP-ECG data formats using BioSig. Computers in Cardiology 2007, CAR 2007. 30 September 2007 through 3 October 2007, Durham, NC. (pp. 253-256) (02766574)
• Papaefstathiou, V., & Papaefstathiou, I. (2006). A hardware-engine for layer-2 classification in low-storage, ultra-high bandwidth environments. DATE '06: Proceedings of the conference on Design, automation and test in Europe. Munich, Germany. (pp. 112-117). 3001 Leuven, Belgium, Belgium: European Design and Automation Association (3-9810801-0-6)
• Darrell, A., Marias, K., Garofalakis, A., Meyer, H., Brady, M.J., & Ripoll, J. (2006). Accounting for point source propagation properties in 3D fluorescence OPT. 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS '06. 30 August 2006 through 3 September 2006, New York, NY. (pp. 6513-6516) (05891019; 1424400325 (ISBN); 9781424400324 (ISBN))
• Chiarugi, F., Zacharioudakis, G., Tsiknakis, M.N., Thestrup, J., Hansen, K.M., Antolin, P., Camara, M.J., Rosengren, P., & Meadows, J. (2006). Ambient Intelligence Support for Tomorrow's Health Care: Scenario Based Requirements and Architectural Specifications of the eu-DOMAIN Platform. In Proceedings of the IEEE Information Technology and Applications in Biomedicine. 26-28 October, Ioannina, Greece
• Papaefstathiou, I., & Papaefstathiou, V. (2006). An innovative low-cost Classification Scheme for combined multi-Gigabit IP and Ethernet Networks. Proc. IEEE International Conference on Communications (ICC2006). 11-15 June, Istanbul, Turkey
• Papamanthou, Ch., & Tollis, I.G. (2006). Applications of parameterized st-orientations in graph drawing algorithms. Graph Drawing. 13th International Symposium on Graph Drawing, GD 2005. 12 September 2005 through 14 September 2005, Limerick, Ireland. (pp. 355-367) (03029743; 3540314253 (ISBN); 9783540314257 (ISBN))
• Antonakaki, D., Kanterakis, A., & Potamias, G.A. (2006). Biomedical literature mining for text classification and construction of gene networks. Advances in Artificial Intelligence. 4th Helenic Conference 4th Helenic Conference on AI, SETN 2006. 18 May 2006 through 20 May 2006, Heraklion, Crete. (pp. 469-473) (03029743; 354034117X (ISBN); 9783540341178 (ISBN))
• Manganas, A. (2006). Blended learning approach to health emergency training of first-responders and citizens. In Proceedings of the 12th International Conference on Technology Supported Learning & Training, ONLINE EDUCA. Berlin, Germany
• Tsiknakis, M.N., Kafetzopoulos, D., Potamias, G.A., Analyti, A., Marias, K., & Manganas, A. (2006). Building a European biomedical grid on cancer: the ACGT Integrated Project.. Challenges and Opportunities of Healthgrids: Proceedings of the HealthGrid 2006 Conference. Valencia, Spain. (pp. 247-258). IOS Press (09269630)
• Xanthopoulos, P., Golemati, S., Sakkalis, V., Ktonas, P.Y., Ortigueira, M.D., Zervakis, M.E., Paparrigopoulos, T., Tsekou, H., & Soldatos, C.R. (2006). Comparative analysis of time-frequency methods estimating the time-varying microstructure of sleep EEG spindles. October 26-28, Ioannina - Epirus, Greece
• Tsiknakis, M.N., Kafetzopoulos, D., Potamias, G.A., Analyti, A., Marias, K., & Sfakianakis, S.G. (2006). Developing a European Biomedical GRID for post-genomic research on Cancer. Proceedings of the IEEE International Topic Conference on Information Technology in Biomedicine (ITAB-2006). 25-28 October, Ioannina, Greece
• Potamias, G.A., & Kanterakis, A. (2006). DNA promoter prediction via feature selection: The MineProm system. September 6, Thessaloniki, Greece. (pp. 110-120)
• Sfakianakis, S.G., Chronaki, C., Bernstein, I., Norgaard, J.R., Katehakis, D.G., Potamias, G.A., & Tsiknakis, M.N. (2006). Early experience from HL7 v3 tools, the Pedigree topic, and CDA in the Danish HNPCC Registry. International HL7 Interoperability Conference IHIC. 24-25 August, Cologne, Germany
• Kouroubali, A., Sakkalis, V., Chronaki, C., & Tsiknakis, M.N. (2006). eChallenges in the Implementation of eHealth Services over a Hybrid Network Architecture. eChallenges 06 Conference. 25-27 October, Barcelona, Spain
• Sakkalis, V., Zervakis, M.E., Bigan, C., Cassar, T., Camilleri, K.P., Fabri, S.G., & Micheloyannis, S. (2006). EEG feature extraction and selection methods using wavelets and ARMA model for classifying mild epileptic signal patterns. In Proceedings of The BIOPATTERN Brain S.I.G Workshop . May 18-19, Gotteborg, Sweden. (pp. 21-22)
• Fischer, R., Chiarugi, F., & Zywietz, T.K. (2006). Enhanced integrated format and content checking for processing of SCP ECG records. Computers in Cardiology, 2006.  (pp. 413-416)
• Petroudi, S., Marias, K., & Brady, M.J. (2006). Evaluation of Effects of HRT on Breast Density. Digital Mammography, 8th International Workshop, IWDM 2006. June 18-21, Manchester, UK. (pp. 39-45)
• Manganas, A. (2006). Evaluation Results of an Innovative Basic Life Support CD for the Training of Non-professional Health Emergency Operators and Citizens. In Proceedings of ICICTE 2006: International Conference On Information & Communication Technologies In Education. 6 - 8 July, Rhodes, Greece
• May, M., Potamias, G.A., & Ruping, S. (2006). Grid-based knowledge discovery in clinico-genomic data. 7th International Symposium on Biological and Medical Data Analysis, ISBMDA 2006. 7 December 2006 through 8 December 2006, Thessaloniki. (pp. 219-230) (03029743; 3540680632 (ISBN); 9783540680635 (ISBN))
• Chronaki, C., Chiarugi, F., & Reynolds, M. (2006). Grid-enabled medical devices, innovation in eHealth and OpenECG network paradigm. presented at Conference ITAB 2006 . 26-28 October, Ioannina Greece
• Margaritis, Th., Marias, K., & Kafetzopoulos, D. (2006). Improved microarray spot segmentation by combining two information channels. 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS '06. 30 August 2006 through 3 September 2006, New York, NY. (pp. 5850-5853) (05891019; 1424400325 (ISBN); 9781424400324 (ISBN))
• Xanthopoulos, P., Golemati, S., Sakkalis, V., Ktonas, P.Y., Zervakis, M.E., & Soldatos, C.R. (2006). Modeling the time-varying microstructure of simulated sleep EEG spindles using time-frequency analysis methods. Engineering in Medicine and Biology Society, 2006. EMBS '06. 28th Annual International Conference of the IEEE. May 18-19, Sweden. (pp. 2438-2441) (1557-170X)
• Cortese, P.F., Battista, G.D., Frati, F., Grilli, L., Lehmann, K.A., Liotta, G., Patrignani, M., Tollis, I.G., & Trotta, F. (2006). On the Topologies of Local Minimum Spanning Trees. Combinatorial and Algorithmic Aspects of Networking, Third Workshop, CAAN 2006. 2 July, Chester, UK. (pp. 31-44). Springer
• Chronaki, C., & Chiarugi, F. (2006). OpenECG: testing conformance to CEN/EN1064 standard. ESBME 2006, Patras, Greece, July 2006.. 7-9 July, Patras
• Zacharopoulou, F., Marias, K., Georgiadi, E., Tollis, I.G., & Maris, Th.G. (2006). Optimized MR Imaging methology for tumour characterization. In 2nd International Advanced Research Workshop on In Silico Oncology. Kolympari, Chania, Greece. (pp. 46-47)
• Stamatakis, A. (2006). Phylogenetic models of rate heterogeneity: a high performance computing perspective. PDPS2006. 25 April, Rhodos, Greece. (pp. 278). Los Alamitos, CA, USA: IEEE Computer Society
• Moustakis, V.A. (2006). Post supervised based learning of feature weight values. 4th Helenic Conference on AI, SETN 2006. 18 May 2006 through 20 May 2006, Heraklion, Crete. (pp. 279-289) (03029743; 354034117X (ISBN); 9783540341178 (ISBN))
• Spanakis, E.G., Lelis, P., Chiarugi, F., & Chronaki, C. (2006). R&D challenges in developing an ambient intelligence eHealth platform.  EMBEC 2005, Prague, Czech Republic, November 2005.. 20-25 November, Prague, Czech Republic. (pp. 1727-1983)
• Oikonomou, Th., Sakkalis, V., Tollis, I.G., & Micheloyannis, S. (2006). Searching and Visualizing Brain Networks in Schizophrenia. Biological and Medical Data Analysis. In Proceedings of the 7th International Symposium, ISBMDA 2006. December 7-8, Thessaloniki, Greece. (pp. 172-182). Springer
• Chiarugi, F., Tsiknakis, M.N., Conforti, D., Lagani, V., Perticone, F., Parati, G., Kawecka-Jaszcz, K., Marsh, A., Stratakis, M., Di Bona, S., Fontanelli, R., Guerri, D., Salvetti, O., Gamberger, D., & Valentini, M. (2006). Support for the Medical-Clinical Management of Heart Failure within Elderly Population: the HEARTFAID Platform. In Proceedings of the IEEE Information Technology and Applications in Biomedicine. 26-28 October, Ioannina, Greece
• Szafranski, K., Megraw, M., Reczko, M., & Hatzigeorgiou, A.G. (2006). Support Vector Machines for Predicting microRNA Hairpins. Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, BIOCOMP '06. June 26-29, Las Vegas, Nevada, USA. (pp. 270-276). SREA Press (1-60132-002-7)
• Kanterakis, A., & Potamias, G.A. (2006). Supporting clinico-genomic knowledge discovery: A multi-strategy data mining process. 4th Helenic Conference on AI, SETN 2006. 18 May 2006 through 20 May 2006, Heraklion, Crete. (pp. 520-524) (03029743; 354034117X (ISBN); 9783540341178 (ISBN))
• Sakkalis, V., Oikonomou, Th., Pachou, E., Tollis, I.G., Micheloyannis, S., & Zervakis, M.E. (2006). Time-significant wavelet coherence for the evaluation of schizophrenic brain activity using a graph theory approach. 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS '06. 30 August 2006 through 3 September 2006, New York, NY. (pp. 4265-4268) (05891019; 1424400325 (ISBN); 9781424400324 (ISBN))
• Sakkalis, V., Zervakis, M.E., Bigan, C., Cassar, T., Camilleri, K.P., Fabri, S.G., & Micheloyannis, S. (2006). Validation of time-frequency and ARMA feature extraction methods in classification of mild epileptic signal patterns. In Proceedings of the International Special Topic Conference on Information Technology in Biomedicine ITAB 2006. October, Ioannina, Greece
• Symeonidis, A., Tollis, I.G., & Reczko, M. (2006). Visualization of functional aspects of microRNA regulatory networks using the gene ontology. 7th International Symposium on Biological and Medical Data Analysis, ISBMDA 2006. 7 December 2006 through 8 December 2006, Thessaloniki. (pp. 13-24) (03029743; 3540680632 (ISBN); 9783540680635 (ISBN))
• Papaefstathiou, V., & Papaefstathiou, I. (2005). A low-cost MAC Classification Engine. Proc. 10th Panhellenic Conference on Informatics, (PCI2005). 11-13 November, Volos, Greece
• Papaefstathiou, V., & Papaefstathiou, I. (2005). A Memory Efficient, 100 Gb/sec MAC Classification Engine. LCN '05: Proceedings of the The IEEE Conference on Local Computer Networks 30th Anniversary.  (pp. 470-471). Washington, DC, USA: IEEE Computer Society (0-7695-2421-4)
• Moustakas, J., Marias, K., Dimitriadis, S., & Orphanoudakis, S.C. (2005). A two-level CBIR platform with application to brain MRI retrieval. IEEE International Conference on Multimedia and Expo, ICME 2005. 6 July 2005 through 8 July 2005, Amsterdam. (pp. 1278-1281) (0780393325 (ISBN); 9780780393325 (ISBN))
• Chronaki, C., Chiarugi, F., Sfakianakis, S.G., & Zywietz, C. (2005). A web service for conformance testing of ECG records to the SPC-ECG standard. Computers in Cardiology, 2005. September, Lyon, France. (pp. 961-964)
• Stamatakis, A. (2005). An efficient program for phylogenetic inference using simulated annealing. In Proceedings of 19th IEEE/ACM International Parallel and Distributed Processing Symposium (IPDPS2005), High Performance Computational Biology Workshop. April, Denver, Colorado. (pp. 8 pp.)
• Marias, K., Linguraru, M.G., Ballester, M.A.G., Petroudi, S., Tsiknakis, M.N., & Brady, M.J. (2005). Automatic Labelling and BI-RADS Characterisation of Mammogram Densities. Engineering in Medicine and Biology Society, 2005. IEEE-EMBS 2005. In Proceedings of 27th IEEE Engineering in Medicine and Biology Society (EMBS) Annual International Conference. Shanghai, China. (pp. 6394-6398)
• Potamias, G.A., Analyti, A., Kafetzopoulos, D., Kafousi, M., Margaritis, Th., Plexousakis, D., Poirazi, P., Reczko, M., Tollis, I.G., Sanidas, E., Stathopoulos, E., Tsiknakis, M.N., & Vassilaros, S. (2005). Breast Cancer and Biomedical Informatics: The PrognoChip Project. Proceedings of the 17th IMACS World Congress Scientific Computation, Applied Mathematics and Simulation. July, Paris, France. Paris, France (2-915913-02-1)
• Papadopouli, M., Shen, H., & Spanakis, E.G. (2005). Characterizing the duration and association patterns of wireless access in a campus. 11th European Wireless Conference 2005. Nicosia, Cyprus
• Bader, D., Stamatakis, A., & Roshan, U. (2005). Computational grand challenges in assembling the tree of life: Problems and solutions. The IEEE and ACM Supercomputing Conference 2005 (SC2005) Tutorial. 
• Chiarugi, F., Cantini, F., Conforti, D., Varanini, M., & Vrouchos, G. (2005). Discrimination between Paroxysmal and Sustained Atrial Fibrillation Based on a Two-Lead Surface ECG. ISHNE & ISE Congress 2005, Gdansk, Poland, June 2005. 
• Varanini, M., Menicucci, D., Cantini, F., Conforti, D., Chiarugi, F., & Balocchi, R. (2005). ECG Spectral Analysis to Predict Spontaneous Termination of Atrial Fibrillation. WE-Heraeus-Seminar on Cardiovascular Physics 2005, Bad Honnef, Germany, May 2005. 
• Potamias, G.A., Koumakis, L., & Moustakis, V.A. (2005). Enhancing web based services by coupling document classification with user profile. EUROCON 2005 - The International Conference on Computer as a Tool. 21 November 2005 through 24 November 2005, Belgrade. (pp. 205-208) (142440049X (ISBN); 9781424400492 (ISBN))
• Tsiknakis, M.N., Kouroubali, A., Vourvahakis, D., & Orphanoudakis, S.C. (2005). Implementing a Regional Health Information Network: Impact on Health Care Performance and the Management of Change.  (pp. 297-329) (14748231; 0762312289 (ISBN); 9780762312283 (ISBN))
• Charalambous, M., Trancoso, P., & Stamatakis, A. (2005). Initial experiences porting a bioinformatics application to a graphics processor. Proceedings of the 10th Panhellenic Conference on Informatics.  (pp. 415-425). Volos, Greece
• Kouroubali, A., Vourvahakis, D., & Tsiknakis, M.N. (2005). Innovative Practices in the Emergency Medical Services in Crete. iSHMIR 05. September, Thessaloniki, Greece
• Chronaki, C., & Chiarugi, F. (2005). Interoperability as a Quality Label for e-Health Services. presented at TEPR 2005 Conference. May 2005, Salt Lake City, Utah, USA
• Papadopouli, M., Shen, H., & Spanakis, E.G. (2005). Modeling client arrivals at access points in wireless campus-wide networks. 14th IEEE Workshop on Local and Metropolitan Area Networks,. 18-21 September, Chania, Crete, Greece (0780395654 (ISBN); 9780780395657 (ISBN))
• Du, Z., Stamatakis, A., Lin, F., Roshan, U., & Nakhleh, L. (2005). Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood. High Performance Computing and Communcations. First International Conference, HPCC 2005. September 21-23, Sorrento, Italy. (pp. 776-785)
• Stamatakis, A., Ott, M., & Ludwig, Th. (2005). RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs. Parallel Computing Technologies (8th PaCT '05); Lecture Notes in Computer Science (LNCS). September, (pp. 288-302). New York; Krasnoyarsk, Russia: Springer-Verlag
• Stathiakis, N., Katehakis, D.G., Chronaki, C., & Tsiknakis, M.N. (2005). Security Risk Management in Electronic Health Record Systems. 21st Annual Conference & Exhibition Towards an Electronic Patient Record (TEPR). 16-18 May, Salt Lake City, USA
• Staakovic, M., Moustakis, V.A., & Staokovic, S. (2005). Text categorization using informative vector machines. EUROCON 2005 - The International Conference on Computer as a Tool. 21 November 2005 through 24 November 2005, Belgrade. (pp. 209-212) (142440049X (ISBN); 9781424400492 (ISBN))
• Arvelakis, A., Reczko, M., Stamatakis, A., Symeonidis, A., & Tollis, I.G. (2005). Using treemaps to visualize phylogenetic trees. Biological and Medical Data Analysis. In Proceedings of the 6th International Symposium on Biological and Medical Data Analysis, ISBMDA 2005 . 10 November 2005 through 11 November 2005, Aveiro. (pp. 283-293). Berlin / Heidelberg: Springer (03029743; 3540296743 (ISBN); 9783540296744 (ISBN))
• Six, J.M., & Tollis, I.G. (2004). A Framework for User-Grouped Circular Drawings. In Proceedings of the 2003 International Symposium on Graph Drawing (GD 2003). September, Perugis, Italy. (pp. 135-146) (03029743)
• Lourakis, M.I.A., Argyros, A. A., & Marias, K. (2004). A graph-based approach to corner matching using mutual information as a local similarity measure. in proceedings of the International Conference on Pattern Recognition, (ICPR’04). August 23-26, 2004, Cambridge. (pp. 827-830) (10514651) (pdf)
• Tsiknakis, M.N., Katehakis, D.G., & Orphanoudakis, S.C. (2004). A health information infrastructure enabling secure access to the life-long multimedia electronic health record. CARS. June 23-26, Chicago, USA. (pp. 289-294)
• Tsiknakis, M.N., Potamias, G.A., & Kafetzopoulos, D. (2004). An Integrated Clinico-genomic computational Environment: Design and operational specifications. In Proc. of the 2nd International Conference on Information Communication Technologies in Health, "Health Informatics & Health Telematics: Foundations for High Quality of Care". July 8-10, Samos, Greece
• Chronaki, C., Lelis, P., Chiarugi, F., Trypakis, D., Moumouris, K., Stavrakis, H., Kavlentakis, G., Stathiakis, N., Tsiknakis, M.N., & Orphanoudakis, S.C. (2004). An open eHealth platform for health management using adaptable service profiles. CARS. June 23-26, Chicago, USA. (pp. 295-300)
• Potamias, G.A., Analyti, A., Kafetzopoulos, D., Tsiknakis, M.N., Plexousakis, D., Poirazi, P., Reczko, M., Tollis, I.G., Sanidas, E., Stathopoulos, E., & Vassilaros, S. (2004). Breast Cancer, Microarrays and Biomedical Informatics: The Prognochip Project. First International Advanced Research Workshop In Silico Oncology: Advances and Challenges (1st IARWISO). 9-11 September, Sparta, Greece
• Tzelepis., Th.Z., Tsiknakis, M.N., Katehakis, D.G., & Orphanoudakis, S.C. (2004). Design and Implementation of 'Two-level' Clinical Information Systems, based on Archetypes. 2nd International Conference on Information Communication Technologies in Health (ICICTH 2004), Samos Island, Greece, July 8-10, 2004. 
• Chronaki, C., Chiarugi, F., Macerata, A., Conforti, F., Voss, H., Johansen, I., Ruiz-Fernandez, R., & Zywietz, C. (2004). Interoperability in Digital Electrocardiography after the OpenECG Project.  (pp. 49-52) (0276-6574)
• Chronaki, C., Chiarugi, F., Trypakis, D., Tsiknakis, M.N., & Orphanoudakis, S.C. (2004). Interoperability of ECG Devices and the Electronic Health Record: Challenges and Opportunities. MEDICON 2004 Conference. August, Ischia, Italy
• Potamias, G.A. (2004). Knowledgeable clustering of microarray data. November 18-19, Barcelona, Spain. (pp. 491-497) (03029743)
• Potamias, G.A., & Moustakis, V.A. (2004). Learning in-between concept descriptions using iterative induction. Third Hellenic Conference on AI, SETN 2004. 5 May 2004 through 8 May 2004, Samos. (pp. 164-173) (03029743)
• Potamias, G.A., & Dermon, C.R. (2004). Mining Brain Developmental Events: Profiling Protein Synthesis Activity With Clustering Techniques. (Abstract + poster). In ISN 2004: Special Neurochemistry Conference "Changes in Neuronal Gene Expression and CNS Drug Responses". 13-16 May, Avignon, France
• Marias, K., Ripoll, J., Ntziachristos, V., & Orphanoudakis, S.C. (2004). Non-rigid image transformation for assessing changes in fluorescence imaging data of molecular activity in time-dependent geometries. 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano. 15 April 2004 through 18 April 2004, Arlington, VA. (pp. 484-487) (0780383885 (ISBN))
• Cantini, F., Conforti, F., Varanini, M., Chiarugi, F., & Vrouchos, G. (2004). Predicting the end of an atrial fibrillation episode: the physionet challenge. Computers in Cardiology, 2004.  (pp. 121-124)
• Lelis, P., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2004). Promoting the Engineering of adaptable eHealth services. In Proc. of the 2nd International Conference on Information Communication Technologies in Health, "Health Informatics & Health Telematics: Foundations for High Quality of Care". July 8-10, Samos, Greece
• Hatzigeorgiou, A.G., & Reczko, M. (2004). Signal peptide prediction on DNA sequences with artificial neural networks. 2004 IEEE International Workshop on Biomedical Circuits and Systems. 1 December 2004 through 3 December 2004, Singapore (0780386655 (ISBN))
• Chronaki, C. (2004). Towards a network of interoperability testing centers: An OpenECG perspective. 
• Symeonidis, A., & Tollis, I.G. (2004). Visualization of biological information with circular drawings. Biological and Medical Data Analysis. In Proceedings of 2004 International Symposium on Biological and Medical Data Analysis (ISBMDA 2004). 18-19 November, Barcelona, Spain. (pp. 468-478). Springer Berlin / Heidelberg (03029743)
• Sakkalis, V., Chiarugi, F., Kostomanolakis, S.G., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). A gateway between the SCP-ECG and the DICOM supplement 30 waveform standard. Computers in Cardiology 2003. 21 September 2003 through 24 September 2003, Thessaloniki Chalkidiki. (pp. 25-28) (02766574)
• Dimitriadis, S., Marias, K., & Orphanoudakis, S.C. (2003). A Versatile Image Retrieval Platform based on a Multi-agent Architecture. In Proceedings of the 6th International Conference on Visual Information Systems. September 24-26, Florida, USA. (pp. 387-392)
• Chronaki, C., Chiarugi, F., Lees, P.J., Macerata, A., Conforti, F., Bruun-Rasmussen, M., Fernandez, R.R., & Zywietz, C. (2003). A year in the life of the openECG network. Computers in Cardiology 2003. 21 September 2003 through 24 September 2003, Thessaloniki Chalkidiki. (pp. 17-20) (02766574)
• Potamias, G.A. (2003). Adaptive classification of web documents to users interests. November 8-10, Nicosia, cyprus. (pp. 147-158) (03029743)
• Chronaki, C., Chiarugi, F., Mavrogiannaki, E., Demou, C., Lelis, P., Trypakis, D., Spanakis, E.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). An eHealth platform for instant interaction among health professionals. Computers in Cardiology 2003. 21 September 2003 through 24 September 2003, Thessaloniki Chalkidiki. (pp. 101-104) (02766574)
• Fischer, R., Chiarugi, F., Schmid, J.J., Norgall, T., & Zywietz, C. (2003). Communication and retrieval of ECG data: how many standards do we need?. Computers in Cardiology, 2003. 21-24 September, Thessaloniki,. Greece. (pp. 21-24) (0276-6547)
• Chiarugi, F., Trypakis, D., Kontogiannis, V., Lees, P.J., Chronaki, C., Zeaki, M., Giannakoudakis, N., Vourvahakis, D., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). Continuous ECG monitoring in the management of pre-hospital health emergencies. Computers in Cardiology 2003. 21 September 2003 through 24 September 2003, Thessaloniki Chalkidiki. (pp. 205-208) (02766574)
• Chiarugi, F., Spanakis, E.G., Lees, P.J., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). ECG in your hands: A multi-vendor ECG viewer for personal digital assistants. Computers in Cardiology 2003. 21 September 2003 through 24 September 2003, Thessaloniki Chalkidiki. (pp. 359-362) (02766574)
• Potamias, G.A., & Dermon, C.R. (2003). Mining brain developmental Events: Profiling & Modeling protein Synthesis Activity with Clustering Techniques(poster & abstract). In 6th World Congress of Neuroscience - IBRO. Prague, Czech Republic
• Stathiakis, N., Chronaki, C., Skipenes, E., Henriksen, E., Charalambous, E., Sykianakis, A., Vrouchos, G., Antonakis, N., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). Risk assessment of a cardiology eHealth service in HYGEIAnet. Computers in Cardiology 2003. 21 September 2003 through 24 September 2003, Thessaloniki Chalkidiki. (pp. 201-204) (02766574)
• Potamias, G.A., Koumakis, L., Charissis, G., Moustakis, V.A., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). Supporting Population Centered Medical Decision Making: Design Recommendations and Preliminary Assessment. Proceedings of the Tenth International Conference on Human-Computer Interaction; Universal access in HCI : inclusive design in the information society.  (pp. 795-799)
• Bruun-Rasmussen, M., Kaae, T., Tynan, L., & Chronaki, C. (2003). The Impact of EHR and Digital Electrocardiograms. Medical informatics Europe; The new navigators: from professionals to patients. 2003, Saint Malo, France. (pp. 257-262). IOS Press (1586033476 427490590x)
• Potamias, G.A. (2003). The Utility of Sequence, Function and Transcriptional Information in Gene Expression Profiling (extended abstract). In EUNITE Workshop on Intelligent Technologies for Gene Expression Based Individualized Medicine. Jena, Germany
• Potamias, G.A. (2003). Utilizing Genes Functional Classification in Microarray Data Analysis: a Hybrid Clustering Approach. In Procs 9th Panhellenic Conference in Informatics. Thessaloniki, Greece. (pp. 417-430)
• Bruun-Rasmussen, M., Bernstein, K., & Chronaki, C. (2002). Collaboration - a New IT-Service in the Next Generation of Regional Health Care Networks. Medical informatics Europe; Health data in the information society proceedings of MIE2002. 2002, (pp. 815-820). IOS Press (1586032798 4274905306)
• Potamias, G.A. (2002). Distance and Feature-Based Clustering of Time Series: An Application on Neurophysiology. Methods and Applications of Artificial Intelligence, Second Hellenic Conference on AI, SETN 2002. April 11-12, Thessaloniki, Greece. (pp. 237-248)
• Tsiknakis, M.N., Lelis, P., & Chronaki, C. (2002). HL7 CDA in HYGEIAnet. The Regional Health Information Network of Crete, HL7 International CDA Conference. 
• Katehakis, D.G., Kostomanolakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2002). Image Management in an Integrated Electronic Health Record Environment. In Proceedings of EuroPACS 2002, 20th International Conference. 5-7 september, Oulou, Finland. (pp. 87-92)
• Chronaki, C., Chiarugi, F., Lees, P.J., Bruun-Rasmussen, M., Conforti, F., Fernandez, R.R., & Zywietz, C. (2002). Open ECG: A European project to promote the SCP-ECG standard, a further step towards interoperability in electrocardiography. Computers in Cardiology 2002. 22 September 2002 through 25 September 2002, Memphis, TN. (pp. 285-288) (02766574)
• Chiarugi, F., Spanakis, E.G., Lees, P.J., Chronaki, C., Tsiknakis, M.N., Traganitis, A.P., & Orphanoudakis, S.C. (2002). Real-time cardiac monitoring over a regional health network: Preliminary results from initial field testing. Computers in Cardiology 2002. 22 September 2002 through 25 September 2002, Memphis, TN. (pp. 347-350) (02766574)
• Chiarugi, F., Spanakis, E.G., Lees, P.J., Tsiknakis, M.N., Traganitis, A.P., & Orphanoudakis, S.C. (2002). Remote Multiparametric Monitoring in a Regional Health Network. 2nd European Medical & Biological Engineering Conference (EMBEC '02). Vienna, Austria
• Piggott, D., Chronaki, C., Bruun-Rasmussen, M., Katehakis, D.G., Pakarinen, V., Saranummi, N., Viitanen, J., & Itala, N. (2002). Reporting Experiences from Using the HL7 Clinical Document Architecture in the PICNIC. presented at HL7 International CDA Conference. October 7-10, Berlin, Germany
• Kouroubali, A. (2002). Structuration Theory and Conception-Reality Gaps: Addressing Cause and Effect of Implementation Outcomes in Health Care Information Systems. HICSS '02: Proceedings of the 35th Annual Hawaii International Conference on System Sciences (HICSS '02)-Volume 6.  (pp. 150.2). Washington, DC, USA: IEEE Computer Society (0-7695-1435-9)
• Chronaki, C., Lees, P.J., Chiarugi, F., Leisch, E., Tsiknakis, M.N., & Orphanoudakis, S.C. (2002). Towards an Integrated Cardiology Information System. Proceedings of TEPR 2002, Toward an Electronic Patient Record Conference. May, Seattle, Washington, USA
• Potamias, G.A. (2001). Adaptive Classification of Web Documents to Users Interests. Advances in Informatics, 8th Panhellenic Conference on Informatics, PCI 2001. 8-10 November, Nicosia, Cyprus. (pp. 147-158)
• Katehakis, D.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). An architecture for integrated regional health telematics networks. 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 25 October 2001 through 28 October 2001, Istanbul. (pp. 3642-3645) (04549244)
• Chronaki, C., Lelis, P., Demou, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). An HL7/CDA framework for the design and deployment of telemedicine services. 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 25 October 2001 through 28 October 2001, Istanbul. (pp. 3504-3507) (04549244)
• Frossyniotis, D., Vrettos, S., Vogiatzis, D., Stafylopatis, A., Constantinopoulos, C., Fotiadis, D.I., Likas, A., Potamias, G.A., Naka, A., Tzimas, T., & Michalis, L.L. (2001). An Intelligent System for the Early Diagnosis of Coronary Artery Disease. In Procs 4th International Conference on Neural Networks and Expert Systems in Medicine and Healthcare - NNESMED. Milos, Greece. (pp. 238-244)
• Potamias, G.A. (2001). Content-Based Similarity Assessment in Multi-segmented Medical Image Data Bases. Machine Learning and Data Mining in Pattern Recognition. Second International Workshop, MLDM 2001. July 25-27, Leipzig, Germany. (pp. 347-362)
• Chiarugi, F., Lees, P.J., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Developing manufacturer-independent components for ECG viewing and for data exchange with ECG devices: Can the SCP-ECG standard help?. Computer in Cardiology 2001. 23 September 2001 through 26 September 2001, Rotterdam. (pp. 185-188) (02766574)
• Barlas, G., Kostomanolakis, S.G., & Orphanoudakis, S.C. (2001). DICOM image compression using a hierarchy of predictors. 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 25 October 2001 through 28 October 2001, Istanbul. (pp. 2445-2448) (04549244)
• Katehakis, D.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Enabling Components of HYGEIAnet. 17th Annual Towards an Electronic Patient Record Conference and Exhibition (TEPR 2001). 8-13 May, Boston, MA. 8-13 May, (pp. 146-153)
• Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Fundamental components for the realization of a federated integrated electronic health record environment. 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 25 October 2001 through 28 October 2001, Istanbul. (pp. 3646-3649) (04549244)
• Traganitis, A.P., Trypakis, D., Spanakis, E.G., Condos, S., Stamkopoulos, T., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Home monitoring and personal health management services in a regional health telematics network. 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 25 October 2001 through 28 October 2001, Istanbul. (pp. 3575-3578) (04549244)
• Chiarugi, F., Lombardi, D., Lees, P.J., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Integration of an ECG management system with an existing clinical database to support daily ECG procedures in a cardiology department.  The European Society of Cardiology - XXIII Congress 2001, Stockholm, Sweden, September 2001.. 
• Potamias, G.A., & Moustakis, V.A. (2001). Knowledge discovery from distributed clinical data sources: The era for internet-based epidemiology. 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 25 October 2001 through 28 October 2001, Istanbul. (pp. 3638-3641) (04549244)
• Potamias, G.A., Papanikolaou, E., & Hatzigeorgiou, A.G. (2001). Knowledge-based TDNN architectures for features recognition in DNA sequences. International Joint Conference on Neural Networks (IJCNN '01). 15 July 2001 through 19 July 2001, Washington, DC. (pp. 2327-2332)
• Messaritakis, G., Zacharioudakis, G., Lalis, S., & Houstis, C.E. (2001). Mapeditor: A Framework for the Manipulation of Spatial Data Objects on the WWW. 15th Annual GIS Conference (GIS 2001), Vancouver, Canada, February 19-22 2001.. 
• Moustakis, V.A., & Potamias, G.A. (2001). Mining Coherence in Time Series Data. Usability evaluation and interface design Human-computer interaction; Proceedings of the HCI international 2001. 2001 Aug, New Orleans. (pp. 928-932). Lawrence Erlbaum Associates (0805836071 0805836101)
• Potamias, G.A., & Dermon, C.R. (2001). Patterning Brain Developmental Events via the Discovery of Time-Series Coherences. In Procs 4th International Conference on Neural Networks and Expert Systems in Medicine and Healthcare - NNESMED. Milos, Greece. (pp. 281-287)
• Chronaki, C., Lees, P.J., Antonakis, N., Chiarugi, F., Vrouchos, G., Nikolaidis, G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Preliminary results from the deployment of integrated teleconsultation services in rural crete. Computer in Cardiology 2001. 23 September 2001 through 26 September 2001, Rotterdam. (pp. 671-674) (02766574)
• Lees, P.J., Chiarugi, F., Lombardi, D., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Simulator of patient traffic in a cardiology department for testing the integration of an ECG management system with an existing clinical database. Computer in Cardiology 2001. 23 September 2001 through 26 September 2001, Rotterdam. (pp. 197-200) (02766574)
• Chronaki, C., Chiarugi, F., Antonakis, N., Papakonstanti, E., Charalambous, E., Kioulpalis, A., Sykianakis, A., Nikolaidis, G., Vrouchos, G., & Orphanoudakis, S.C. (2001). Teleconsultation for the Clinical Management of Suspected cardiac Patients in Rural Crete: a HYGEIAnet Project. European Society of Cardiology - XXIII Congress. September
• Tsiknakis, M.N., Chronaki, C., Kostomanolakis, S.G., & Orphanoudakis, S.C. (2001). Teleradiology services within the context of an integrated regional network. CARS. June 27-30, Berlin, Germany. (pp. 1267-1268)
• Chiarugi, F., Lees, P.J., Lombardi, D., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Ενσωμάτωση Εμπορικού Συστήματος Διαχείρισης Ψηφιακών ΗΚΓ σε Προϋπάρχουσα Βάση Κλινικών Δεδομένων για την Υποστήριξη Καθημερινής Διαδικασίας σε Καρδιολογική Κλινική Νοσοκομείου. παρουσιάστηκε στο Συνέδριο της Ελληνικής Καρδιολογικής Εταιρείας το 2001. 
• Katehakis, D.G., Lelis, P., Karabela, E., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). An Environment for the Creation of an Integrated Electronic Health Record in HYGEIAnet. Proceedings of the 16th Annual Towards an Electronic Patient Record Conference and Exhibition (TEPR 2000). May 9-11, San Francisco, California, USA. (pp. 89-98)
• Kostomanolakis, S.G., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). DicomGW: DICOM functionality as middleware. ECR 2000, Scientific Exhibit Compurad/EURORAD. 
• Zacharakis, G., Sakkalis, V., Filippidis, G., Zolindaki, A., Koumantakis, E., & Papazoglou, T.G. (2000). In vitro Optical Characterization of Female Breast Tissue with Near Infrared fsec Laser Pulses. Optics within life sciences; Optics and lasers in biomedicine and culture. 1998 Oct, Aghia Pelagia, Greece. (pp. 294-296). Springer (3540666486)
• Tsiknakis, M.N., Katehakis, D.G., & Orphanoudakis, S.C. (2000). Information infrastructure for an integrated healthcare services network. ITAB-ITIS 2000. 9 November 2000 through 10 November 2000, Arlington, VA. (pp. 278-283)
• Katehakis, D.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). Information Society Technologies in Healthcare. SOFSEM. November 25 - December 2, Milovy, Czech Republic. (pp. 152-172)
• Chronaki, C., Kostomanolakis, S.G., Lelis, P., Lees, P.J., Chiarugi, F., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). Integrated teleconsultation services in cardiology. Computers in Cardiology 2000. Cambridge, MA, USA. (pp. 175-178). Los Alamitos, CA, United States: IEEE (02766574)
• Lees, P.J., Chronaki, C., Chiarugi, F., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). Interconnectivity of cardiology patient databases using internet technology. Computers in Cardiology 2000. Cambridge, MA, USA. (pp. 667-670). Los Alamitos, CA, United States: IEEE (02766574)
• Hristofis, K., Potamias, G.A., Tsiknakis, M.N., Moustakis, V.A., & Orphanoudakis, S.C. (2000). Mining Distributed and Heterogeneous Data Sources: A Project in the Medical Domain. Parcelona, Spain
• Sarrannumi, N., Tsiknakis, M.N., & Bernstein, K. (2000). Professionals and Citizens Network for Integrated Care. In Proceedings of the EMBC 2000, 22nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. June, Chicago, USA
• Kostomanolakis, S.G., Kavlentakis, G., Sakkalis, V., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). Seamless Integration of Healthcare Processes related to Image Management and Communication in Primary Healthcare Centers. EuroPACS. 21-23 September, Graz. (pp. 126-132)
• Potamias, G.A., Christofis, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). Towards internet-based epidemiology: integration of distributed and heterogeneous clinical data sources. In Word Congress on the Internet on Medicine - MEDNET2000. Brussels, belgium. (pp. 211-212). Amsterdam, The Netherlands: IOS Press (0928-7329)
• Orphanoudakis, S.C. (2000). Virtual versus real mobility of researchers in the biomedical sciences. ITAB-ITIS 2000. 9 November 2000 through 10 November 2000, Arlington, VA. (pp. 151)
• Chronaki, C., Lelis, P., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). XML Technology in Support of Clinical Protocols for Teleconsultation. World congress on the Internet in medicine; Abstracts of MEDNET 2000. 2000 Nov, Brussels. (pp. 207-208). IOS Press
• Leisch, E., & Orphanoudakis, S.C. (1999). HECTOR Solutions. March 15-17, Seville, Spain
• Lees, P.J., Chronaki, C., Simantirakis, E.N., Kostomanolakis, S.G., Orphanoudakis, S.C., & Vardas, P.E. (1999). Remote access to medical records via the Internet: Feasibility, security and multilingual considerations. The 26th Annual Meeting: Computers in Cardiology 1999. 26 September 1999 through 29 September 1999, Hannover, Ger. (pp. 89-92). Los Alamitos, CA, United States: IEEE (02766574)
• Leisch, E., & Orphanoudakis, S.C. (1999). The HECTOR pilot system of crete as part of a regional health telematics network. 
• Tsiknakis, M.N., & Katehakis, D.G. (1999). Virtual EHCR Services over HYGEIAnet: The Patient Clinical Data Directory. In Proceedings of Towards an Electronic Health Record Europe (TEHRE '99). November 15, London, U.K.
• Orphanoudakis, S.C. (1998).  Healthcare Sector: The Wireless Vision . IST '98. 30 November - 2 December, Vienna
• Orphanoudakis, S.C. (1998). Mediterranean Integrated Regional Healthcare Networks. In Proceedings of the Euro-MED NET '98 Conference. March 4-7, Nicosia, Cyprus. (pp. 227-278)
• Orphanoudakis, S.C. (1998). Teleradiology Services in an Integrated Regional Health Telematics Network: Technical Issues and Scenaria of Use. In Proceedings of the EuroPACS '98. October 1-3, Barcelona, Spain. (pp. 133-136)
• Chronaki, C., Zabulis, X., Katehakis, D.G., Giannopoulos, A., Stathiakis, M., Lees, P.J., Simantirakis, E.N., & Vardas, P.E. (1998). WebOnCOLL-enabled Remote Cardiology Consultation for Suspected Myocardial Infarction. In Proceedings of Mednet '98. 16-19 November, London, UK. (pp. 41-43)
• Chronaki, C., Katehakis, D.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (1998). WebOnCOLL: An Open Platform Enabling Collaborative Information Sharing and its Application in Medicine. March 4-7, Nicosia, Cyprus
• Chronaki, C., Zabulis, X., Stathiakis, N., Leisch, E., Katehakis, D.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (1997). A Web-Based Environment for Medical Collaboration in a Regional Health Care Network. In Proceedings of the CAR '97. Berlin, Germany. (pp. 656-661)
• Kaldoudi, E., Zikos, M., Leisch, E., & Orphanoudakis, S.C. (1997). Agent-based workflow processing for functional integration and process re-engineering in the health care domain. Proceedings of EuroPACS '97. September 25-27, Pisa, Italy
• Orphanoudakis, S.C., Leisch, E., Petrou, A., & Orphanoudakis, S.C. (1997). An Approach for the Formal Description of Healthcare-Related Processes. Proceedings of EuroPACS '97. September 25-27, Pisa, Italy. (pp. 179-182)
• Dzeroski, S., Potamias, G.A., Moustakis, V.A., & Charissis, G. (1997). Automated Revision of Expert Rules for Treating Acute Abdominal Pain in Children. AIME. March 23-26, Grenoble, France. (pp. 98-109)
• Moustakis, V.A. (1997). Do People in HCI Use Machine Learning?. HCI (2). August 24-29, San Francisco, California, USA. (pp. 95-98)
• Katehakis, D.G., Tsiknakis, M.N., Armaganidis, A., & Orphanoudakis, S.C. (1997). Functional and Control Integration of an ICU, LIS and PACS Information System. In Proceedings of the 14th Medical Informatics Europe Congress (MIE 97). May 25-29, Porto Carras, Greece. (pp. 15-19). IOS Press
• Orphanoudakis, S.C. (1997). Intelligent Image Management in an Integrated Telemedicine Services Network. Proceedings of the 6th Conference on Artificial Intelligence in Medicine Europe; LNAI. March 23--26, (pp. 12-14). Berlin: Springer (3-540-62709-X)
• Zabulis, X., Chronaki, C., & Orphanoudakis, S.C. (1997). The E2Cnet Service Architecture Paradigm. in Proceedings MIE '97. May 25-29, Porto Carras, Greece. (pp. 569-600)
• Zabulis, X., Chronaki, C., & Orphanoudakis, S.C. (1997). The I- Cnet Service Architecture Paradigm. Medical informatics Europe. 1997, (pp. 596-600). Amsterdam; IOS Press; Tokyo: Ohmsha (9051993439 4274901696)
• Englmeier, K., Moustakis, V.A., & Potamias, G.A. (1996). Advanced Information Systems Based on Information Agents. Advances in applied ergonomics. 1996 May, Istanbul; Turkey. (pp. 491-496). USA Publishing Corporation (0471880159)
• Leisch, E., Tsiknakis, M.N., & Orphanoudakis, S.C. (1996). An architectural framework for the integration of geographically distributed heterogeneous autonomous medical information systems. In Proceedings of EuroPACS '96. October 3-5, Crete, Greece. (pp. 73-77)
• Chronaki, C., Zabulis, X., & Orphanoudakis, S.C. (1996). Maintaining medical image annotations in I2Cnet. Proceedings of EuroPACS '96. October 3-5, (pp. 141-145)
• Orphanoudakis, S.C., Tsiknakis, M.N., & Chronaki, C. (1996). Virtual Workspaces. in Proceedings of the MEDNET 96 conference. October 14-17, Brighton, UK. (pp. 89-91)
• Orphanoudakis, S.C., Tsiknakis, M.N., Chronaki, C., & Kostomanolakis, S.G. (1995). Development of an Integrated Image Management and Communication System on Crete. Computer assisted radiology. 1995 Jun, Berlin. (pp. 481-487). Springer-Verlag (354059177X)
• Ohmann, Ch., Yang, Q., Moustakis, V.A., Lang, K., & Van Elk, P.J. (1995). Machine Learning Techniques Applied to the Diagnosis of Acute Abdominal Pain. AIME '95: Proceedings of the 5th Conference on Artificial Intelligence in Medicine in Europe. June 25-28, Pavia, Italy. (pp. 276-281). London, UK: Springer-Verlag (3-540-60025-6)
• Moustakis, V.A. (1995). Managing Machine Learning Application Development. Proceedings of the Sixth International Conference on Human Computer Interaction: Symbiosis of Human and Artifact. July, Tokyo, Japan. (pp. 1097-1102). Elsevier Science (0921-2647)
• Tsiknakis, M.N., Chronaki, C., Kostomanolakis, S.G., & Orphanoudakis, S.C. (1995). The Regional Health Telematic System of Crete. Health telematics '95: health in the information society. 1995 Jul, Naples; Italy. (pp. 553-558). The Association (8879580035)
• Markatos, E.P., & Chronaki, C. (1994). Using reference counters in update based coherent memory. 6th International PARLE Conference , Proceedings. July 4–8, Athens, Greece. (pp. 805-808)
• Gaga, E., Moustakis, V.A., Charissis, G., & Orphanoudakis, S.C. (1993). IDDD: An Inductive, Domain Dependent Decision Algorithm. ECML. April 5-7, Vienna, Austria. (pp. 408-413)
• Kostomanolakis, S.G., Lourakis, M.I.A., Chronaki, C., Kavaklis, Y., & Orphanoudakis, S.C. (1993). Indexing and Retrieval by Pictorial Content in the E2C Image Database System. In Proceedings of the EuroPACS '93. Sept. 30 - Oct. 2, Rennes, France. (pp. 67-69)
• Morik, K., Potamias, G.A., Moustakis, V.A., & Charissis, G. (1993). Model Based Learning Support to Knowledge Acquisition: A Clinical Case Study. STUDIES IN HEALTH TECHNOLOGY AND INFORMATICS. Proceedings of the Artificial Intelligence in Medicine Conference AIME93. October, Munich; Germany. (pp. 434-439). IOS Press (ISSN: 0926-9630;ISBN: 905199141X)
• Kostomanolakis, S.G., Lourakis, M.I.A., Chronaki, C., Kavaklis, Y., & Orphanoudakis, S.C. (1993). The Architecture of a System for the Indexing of Images by Content. CAR '93. June 24-26, Berlin, Germany. (pp. 278-282). Springer, Verlag
• Morik, K., Potamias, G.A., Moustakis, V.A., & Charissis, G. (1993). Using model-based learning to support clinical decision making - a case study. Proceedings of the Fourth European Conference on Artificial Intelligence in Medicine Europe (AIME93). Amsterdam. (pp. 434-439). IOS Press
• Moustakis, V.A., Morali, A., Vassilakis, P., & Patras, Y. (1993). Using Typicality to Support Inference and Learning. Applied stochastic models and data analysis Advances in stochastic modelling and data analysis. May, Chania; Greece. (pp. 357-383). Kluwer Academic Publishers; c1995 (0792335643)
• Moustakis, V.A., Potamias, G.A., Gaga, E., Blazadonakis, M.E., PVassilakis, P., & Charissis, G. (1992). Bias Identification Using Inductive Learning Techniques - A Medical Case Study. Expert Judgment, Human Error, and Intelligent Systems Workshop, European Conference on Artificial Intelligence - ECA 92. Wien, Austria
• Stafanelli, M., Leaning, M., Zambon, F., Jackson, J.R.P., Moustakis, V.A., & Belazi, M. (1990). GAMES: A General Architecture for Medical Expert Systems. Advances in Medical Informatics. Inproceedings of the AIM Euroforum. 13-15 December, Sevilla, Spain. (pp. 133-140). IOS Press
• De Zegher, I., Venot, A., Moustakis, V.A., Talmon, J., Tange, H., Lane, V., Pierre, D., Charlet, J., Loucoupoulos, P., & Boisvieux, J.F. (1990). IRHIS: Intelligent, adaptive information Retrieval system as Hospital Information System front end. Advances in Medical Informatics. inproceedings AIM Euroforum. 13-15 December, Sevilla, Spain. (pp. 188-198). IOS Press
• Orphanoudakis, S.C., Petrakis, E.G.M., & Kofakis, P. (1989). A medical image database system for tomographic images. Proceedings of Computer Assisted Radiology (CAR '89). June 25-28, Berlin. (pp. 618-622)
• Orphanoudakis, S.C. (1988). Medical Image Analysis, Storage, and Retrieval. In Proceedings of the Computers in Health Sciences Symposium, University of Medicine and Dentistry. November 10, New Jersey, USA. (pp. 135-141)
• Moustakis, V.A., & Orphanoudakis, S.C. (1988). Requirements definition for an integrated hospital information system. Proceedings of EURINFO '88 (1st European Conference on Information Technology for Organizational Systems). May 16-20, Athens, greece. (pp. 852-858)

Papers in Proceedings (abstract reviewed)

• Tzamali, E., Sakkalis, V., & Marias, K. (2012). Cancer metabolism: Computational study of the lactate secretion metabolic strategy. 7th Conference of the Hellenic Society for Computational Biology and Bioinformatics (HSCBB 2012), Heraklion, Greece, October 4-6, 2012. 
• Kouroubali, A., Katehakis, D.G., Berler, A., & Tsiknakis, M.N. (2012). Electronic Health Record: Luxury or Need? (Ηλεκτρονικός Φάκελος Υγείας: Πολυτέλεια ή Ανάγκη;). 14th National Conference of the Hellenic Health Services Management Association, Innovation in Hospital Management, Athens, Greece. October 12-13, (pp. 18)
• Katehakis, D.G. (2011). Electronic Health Record and Citizen Participation in the Care Model (in Greek). 1st International Conference on Life Sciences: Life Sciences and Cancer: “From Prevention to Treatment”, Athens, November 4-5, 2011. November 4-5, (pp. 25-26)
• Yang, M., Chronaki, C., Lüpkesa, C., Thiel, A., Plößnig, M., Hinterbuchner, L., Arbelo, E., Dogac, A., Eichelberg, M., & Hein, A. (2011). iCARDEA: Practical Data Integration for the Follow-up of Cardiovascular Implantable Electronic Device Patients in Cardiological Departments. Computing in Cardiology 2011. 
• Graf, N., Tsiknakis, M.N., Góralczyk, M., McGuiness, N., Verhenneman, G., Claerhout, B., Braun, Y., & Forgó, N. (2011). Legal, ethical and clinical handling of consent in European projects dealing with vulnerable patient groups. 43rd Congress of the International Society of Paediatric Oncology (SIOP), Auckland, Australia, Oct 2011.. 
• Graf, N., Sengstag, T., Schera, F., Martin, L., Claerhout, B., Stenzhorn, H., Nourkami, N., Gessler, M., & Tsiknakis, M.N. (2010). Advanced Wilms Tumour Scenario using the ACGT environment. 7th International Meeting on the Biology of Childhood renal tumours. Canada
• Chronaki, C., Plößnig, M., Tuncer, F., Erturkmen, G.L., Lüpkes, C., Eichelnberg, M., Navarro, X., Pecho, W., & Dogac, A. (2010). Interoperability challenges in the health management of patients with implantable defibrillators. in Computing in Cardiology. September 27-30, Belfast
• Kouroubali, A., Esterle, L., De Moor , G., & Bruun-Rasmussen, M. (2010). Large Scale EHR- implementations: The Other Side of the Story: Social, Organizational & Cultural Aspects. MEDINFO 2010. September 13-16, Cape Town, South Africa
• Kouroubali, A., Sakkalis, V., Vissers, B., Manousos, D., & Tollis, I.G. (2009). eLearning for Basic Life Support: CPR Knowledge for Citizens. In Proceedings of eChallenges (e-2009). October 21-23, Istanbul, Turkey
• Chiarugi, F., Karatzanis, I., Sakkalis, V., Tsamardinos, I., Dermitzaki, Th., Foukarakis, M., & Vrouchos, G. (2009). Predicting the Occurrence of Acute Hypotensive Episodes: The PhysioNet Challenge. In Proceedings of Computers in Cardiology 2009 (CinC 2009). September 13-16, Park City, Utah, USA. IEEE (978-1-4244-7281-9)
• Chronaki, C. (2008). eHealth Consumers Trends in Europe 2005-2007: Results of the WHO/eHealth Consumer Trends Survey. 3rd HL7 Hellas Conference.  8-9 October, Chersonisos, Crete, Greece
• Chronaki, C., Kontogiannis, V., Charalambous, E., Vrouchos, G., Mamantopoulos, A., & Vourvahakis, D. (2008). Safe Exercise. Computers in Cardiology 2008, Bologna, Sept 14-19, 2008 . 
• Chronaki, C., Kouroubali, A., Esterle, L., Orphanoudaki, E., Roumeliotaki, T., & Stathopoulou, A. (2007). Consumer Attitude towards eHealth in Greece. in the Proceedings of Med-e-Tel 2007 International Educational and Networking Forum for eHealth, Telemedicine and Health ICT. 18-20 April, Luxemburg
• Orphanoudakis, S.C., Tsiknakis, M.N., Anthoulakis, D., & Stephanidis, C. (2003). The integrated Electronic Health Record: accessibility, usability and security issues. In C. Stephanidis, (Ed.), Universal Access in HCI: Inclusive Design in the Information Society - Volume 4 of the Proceedings of the 10th International Conference on Human-Computer Interaction (HCI International 2003). 22-27 June, Crete, Greece. (pp. 1168-1172). Mahwah, New Jersey: Lawrence Erlbaum Associates (0-8058-4933-5)
• Tsiknakis, M.N., Katehakis, D.G., & Orphanoudakis, S.C. (2002). Architecture for the Development of Integrated Health Telematics Services Networks (in Greek). 6th FORTH Workshop, Ioannina and Metsovo, Greece, March 1-3, 2002.  (pp. 68-69)
• Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2002). Integrated Electronic Health Record (in Greek). Proceedings of the 6th FORTH Workshop, Ioannina and Metsovo, Greece, March 1-3, 2002.  (pp. 70-71)
• Moustakis, V.A., & Potamias, G.A. (1993). Inductive learning support for decision making. In 3rd International Workshop on Artificial Intelligence in Economics and Management - AIEM3. 25-27 August, Portland, Oregon,USA

Poster presentations (abstract reviewed)

• Maniadi, E., & Tollis, I.G. (2012). VisBolic: A Tool for the Analysis and Visualization of Metabolic Pathways and Networks. 7th Conference of the Hellenic Society for Computational Biology and Bioinformatics, 2012. 
• Mulrenin, R., Radulescu, M., Plößnig, M., Laleci, G., Chronaki, C., & Kabak, Y. (2011). Patient Empowerment Framework for Cardiac Patients. MIE2011, August 2011. 
• Dogac, A., Chronaki, C., Laleci, G.B., Yuksel, M., Thoben, W., Plößnig, M., Strohmer, B., Pecho, W., Guillén, A., & Brugada, J. (2010). An Intelligent Platform for Personalized Remote Monitoring of the CIED Patients. Poster presented at MedInfo. Capetown, South Africa
• Grangeat, P., Gerfault, L., Paulus, C., Kritsotakis, V., Tsiknakis, M.N., Lisacek, F., Binz, P.A., Perez, M., Trauchessec, M., & Brun, V. (2010). First demonstration on NSE biomarker of a computational environment dedicated to lab-on-chip based cancer diagnosis. 58th ASMS Conference on Mass Spectrometry and Allied Topics. May 23 - 27, Salt Lake City, Utah
• Potamias, G.A. (2010). Revealing Disease Molecular Regulatory Mechanisms: Coupling Microarrays and Gene Regulatory Networks. Proceedings of the 5th Conference of the Hellenic Society for Computational Biology and Bioinformatics (HSCBB10). October 17-19, Alaxandrouplois, Greece
• Potamias, G.A., Koumakis, L., Kanterakis, A., & Moustakis, V.A. (2010). Towards the Discovery of Reliable Biomarkers from Gene-Expression Profiles: An Iterative Constraint Satisfaction Learning Approach. Artificial Intelligence: Theories, Models and Applications, 6th Hellenic Conference on AI, SETN 2010. 4-7 May, Athens, Greece. (pp. 233-242). Springer (978-3-642-12841-7)
• Chronaki, C., Vareli, K., & Roumeliotaki, T. (2008). Consumer Attitudes towards eHealth in Greece – an update.  Med-3-tel 2008 Conference. 14-19 April, Luxemburg
• Graf, N., Desmedt, C., Hoppe, A., Tsiknakis, M.N., Dionysiou, D.D., & Stamatakos, G.S. (2007). Clinical requirements of "In Silico Oncology" as part of the integrated project ACGT (Advancing Clinico-Genomic Trials on Cancer). ECCO 14 Abstract Book. 23-27 September, Barcelona, Spain. (pp. 83-83) (1359-6349)
• Kouroubali, A., Aggourakis, N., Kontogiannis, V., Chronaki, C., Yianakoudakis, N., Zeaki, M., Zervopoulos, M., & Vourvahakis, D. (2007). Delivering remote prehospital emergency care education to primary care facilities in Crete. poster presentation on the 15th World Congress on Disaster and Emergency Medicine. May 13-16, Amsterdam, The Netherlands
• Graf, N., Weiler, G., Brochhausen, M., Scherer, F., Hoppe, A., Tsiknakis, M.N., & Kiefer, S. (2007). The importance of anontology based clinical data management system (OCDMS) for clinico-genomic trials in ACGT. In Proceedings of the International Society of Paediatric Oncology Conference 2007. 1-3 November, Mumbai, India
• Potamias, G.A., Dermon, C.R., Stamatakis, A., Moore, T., Moss, M., Rosene, D., & Barbas, H. (2006). A Feature-based Selection Approach for Patterning Adrenoceptor Changes in Hypertension. 5th Forum on European Neuroscience (FENS 2006). 8-12 July, Vienna, Austria
• Potamias, G.A., Tsiknakis, M.N., Papoutsidis, V., Kanterakis, A., Marias, K., & Kafetzopoulos, D. (2006). Advancing Clinico-Genomic Research Trials via Integrated Knowledge Discovery Operations. Informatics in Europe (MIE 2006). August 27-30, Maastricht, the Netherlands
• Chronaki, C., Chiarugi, F., & Fischer, R. (2006). OpenECG: Medical Device Interoperability as a Quality Label for eHealth Services. presented at the conference Computers in Cardiology. 
• Orphanoudaki, E., Voss, H., Kouroubali, A., Roumeliotaki, T., Esterle, L., & Chronaki, C. (). eHealth Consumer Attitudes in Greece and Denmark. to be presented in the 12th International Health (Medical) Informatics Congress, Medinfo, August 20 - 24, 2007 at the Brisbane Convention Centre. Southbank Brisbane, Australia

Key-note addresses (Talks)

• Katehakis, D.G. (2004). eHealth Service Provision: Enabling Innovation in the Delivery of Care. eHealth 2004 Seminar, Tampere, Finland, November 9, 2004. 

Invited papers

• Chronaki, C., Jaffe, C., & Dollin, B. (2011). eMeasures: A standard format for health quality measures. Presented in the EFMI Invited session, MIE2011. 

Demos

• Spanakis, E.G., Pallis, G., Dikaiakos D., & M. (2011). Graph Visualization Tool for Vehicular Ad-Hoc Networks . 2011 IEEE Vehicular Networking Conference (VNC), November 14th –16st 2011, Amsterdam, The Netherlands .