ICS Publications - CML

Conferences (29)

Papers in Proceedings (full-paper reviewed)

Sfakianakis, S.G., Sakkalis, V., Marias, K., Stamatakos, G.S., McKeever, S., Deisboeck, T., & Graf, N. (2012). An architecture for integrating cancer model repositories. 34th IEEE-EMBS, Engineering in Medicine and Biology Society (EMBC 2012), San Diego, USA, August 28-September 1, 2012. (pp. 6628-6631)
Sakkalis, V., Sfakianakis, S.G., & Marias, K. (2012). Bridging social media technologies and scientific research: an exemplary platform for VPH modellings. 3rd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2012), Workshop on Advances in Personalized Healthcare Services, Wearable Mobile Monitoring, and Social Media Pervasive Technologies (APHS 2012), Paris, France, November 21-23, 2012.
Sfakianakis, S.G., Sakkalis, V., & Marias, K. (2012). Scientific Workflows to support in silico modeling in Cancer Research. 5th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation, Athens, Greece, October 22-23, 2012.
Sakkalis, V., Sfakianakis, S.G., Marias, K., Stamatakos, G.S., Misichroni, F., Dionysiou, D.D., McKeever, S., Johnson, D., Deisboeck, T., & Graf, N. (2012). The TUMOR Project: Integrating Cancer Model Repositories for Supporting Predictive Oncology. 2nd Virtual Physiological Human Conference (VPH2012), London, UK, September 18-20, 2012. September 18-20
Martin, L., Anguita, A., Graf, N., Tsiknakis, M.N., Brochhausen, M., Ruping, S., Bucur, A., Sfakianakis, S.G., Sengstag, T., Buffa, F., & Stenzhorn, H. (2011). ACGT: Advancing Clinico-genomic trials on cancer - Four years of experience. MIE 2011, Oslo, Norway, August 2011, Stud Health Technol Inform..
Marias, K., Stamatakos, G.S., Dionysiou, D.D., Sakkalis, V., Sfakianakis, S.G., & Tsiknakis, M.N. (2011). Computational Services for in silico Oncology: Experiences and Research Challenges. 7th GRACM International Congress on Computational Mechanics, Athens, Greece, 30 June – 2 July, 2011..
Bucur, A., Ruping, S., Sengstag, T., Sfakianakis, S.G., Tsiknakis, M.N., & Wegener, D. (2011). The ACGT project in retrospect: Lessons learned and future outlook. Procedia Computer Science, 4:1119 - 1128, 2011. Proceedings of the International Conference on Computational Science, ICCS 2011, Japan, June 2011.
Chronaki, C., Sfakianakis, S.G., Petrakis, Y., Charalambakis, G., Hinterbuchner, L., Radulescu, M., Mulrenin, B., Lüpkes, C., Eichelberg, M., Arbelo, E., Kabak, Y., Laleci, G., & Dogac, A. (2011). Tomorrow’s Integrated Care: Interoperability Testing in Guideline-driven Cardiac Telemonitoring. In Proceedigs of IHIC2011, Orlando Florida, May 2011.
Tsiknakis, M.N., Sfakianakis, S.G., Zacharioudakis, G., & Koumakis, L. (2010). A framework supporting sharing and reuse of data and tools in translational cancer research: Lessons learned for VPH research. 4th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation (IARWISO). September 2010, Athens, Greece
Martin, L., Anguita, A., Graf, N., Tsiknakis, M.N., Brochhausen, M., Rueping, S., Bucur, A., Sfakianakis, S.G., & Stenzhorn, H. (2010). ACGT: Advancing Clinico-genomic trials on cancer – Four years of experience. AMIA 2010 Annual Symposium, Washington DC. 13-15 November 2010, Washington DC
Koumakis, L., Kanterakis, A., Potamias, G.A., Sfakianakis, S.G., Zacharioudakis, G., & Tsiknakis, M.N. (2010). Analyzing gene regulatory networks and gene expression profiles via scientific workflows. International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery. 7-9 July 2010, Chania, Greece
Sfakianakis, S.G., Zervakis, M.E., Tsiknakis, M.N., & Kafetzopoulos, D. (2010). Integration of Biological Knowledge in the Mixture-of-Gaussians Analysis of Genomic Clustering. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010). Nov 2010, Corfu, Greece
Kanterakis, A., Zacharioudakis, G., Koumakis, L., Potamias, G.A., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: A scenario for the coupling of molecular regulatory pathways and gene-expression profiles. 13th International Congress on Medical Informatics (MEDINFO 2010). 12 - 15 of September 2010, South Africa
Zacharioudakis, G., Koumakis, L., Sfakianakis, S.G., & Tsiknakis, M.N. (2009). A semantic infrastructure for the integration of bioinformatics services. 9th International Conference on Intelligent Systems Design and Applications, ISDA 2009. 30 November 2009 through 2 December 2009, Pisa. (pp. 367-372) (9780769538723 (ISBN))
Tsiknakis, M.N., Sfakianakis, S.G., Zacharioudakis, G., Koumakis, L., Kanterakis, A., Potamias, G.A., & Kafetzopoulos, D. (2009). A semantically aware platform for the authoring and secure enactment of bioinformatics workflows. 31st Annual International IEEE EMBS Conference (EMBC2009). September, 2-6, 2009, Hilton Minneapolis, Minnesota, USA.
Sfakianakis, S.G., Graf, N., Hoppe, A., RÃ¼ping, S., Wegener, D., Koumakis, L., & Zacharioudakis, G. (2009). Building a system for advancing clinico-genomic trials on cancer. Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations(AIAI-2009), Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT). April 23-25, http://www.scientificcommons.org/48955097. Thessaloniki, Greece: Fraunhofer EPrints [http://publica.fraunhofer.de/eprints.har] (Germany)
Koumakis, L., Sfakianakis, S.G., Moustakis, V.A., & Potamias, G.A. (2009). Discovery of Genotype-to-Phenotype Associations: A Grid-enabled Scientific Workflow Setting. Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations(AIAI-2009), Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT). April 23-25, http://www.scientificcommons.org/48955097. Thessaloniki, Greece: Fraunhofer EPrints [http://publica.fraunhofer.de/eprints.har] (Germany)
Sfakianakis, S.G., Koumakis, L., Zacharioudakis, G., & Tsiknakis, M.N. (2009). Web-based authoring and secure enactment of bioinformatics workflows. 2009 Workshops at the Grid and Pervasive Computing Conference, GPC 2009. 4 May 2009 through 8 May 2009, Geneva. (pp. 88-95) (9780769536774 (ISBN))
Tsiknakis, M.N., Sfakianakis, S.G., Rueping, S., Trelles, O., Siestang, Th., Claerhout, B., & Virvilis, V. (2008). A semantic grid services architecture in support of efficient knowledge discovery from multilevel clinical and genomic datasets. 1st International Conference on Health Informatics, HEALTHINF 2008. 28 January 2008 through 31 January 2008, Funchal, Madeira. (pp. 279-287) (9789898111166 (ISBN))
Tsiknakis, M.N., Sfakianakis, S.G., Potamias, G.A., Zacharioudakis, G., & Kafetzopoulos, D. (2007). A semantic grid infrastructure enabling integrated access and knowledge discovery from multilevel data in post-genomic clinical trials. July, Sheffield, U.K.Springer (978-1-84628-990-3)
Ruping, S., Sfakianakis, S.G., & Tsiknakis, M.N. (2007). Extending workflow management for knowledge discovery in clinico-genomic data. In Proceedings of the HealthGrid 2007 Conference. 24-27 April, Geneva, Switzerland. (pp. 184-193). Netherlands (0926-9630)
Wegener, D., Sengstag, T., Sfakianakis, S.G., Ruping, S., & Assi, A. (2007). GridR: An R-Based Grid-Enabled Tool for Data Analysis in ACGT Clinico-Genomics Trials. e-Science and Grid Computing, IEEE International Conference on e-Science and Grid Computing. Bangalore, India. (pp. 228-235)
Tsiknakis, M.N., Sfakianakis, S.G., Potamias, G.A., & Kafetzopoulos, D. (2007). Integration of heterogeneous, multilevel biomedical data: Semantic Grid services enabling integrated access, analysis and knowledge discovery in the context of multicentric, post-genomic clinical trials. In Proceedings of the 9th International Conference on Enterprise Information Systems. 12-16 June, Funchal, Madeira â€“ Portugal
Potamias, G.A., Koumakis, L., Kanterakis, A., Sfakianakis, S.G., Analyti, A., Moustakis, V.A., Kafetzopoulos, D., Ruping, S., & Tsiknakis, M.N. (2007). Knowledge Discovery Scientific Workflows in Clinico-Genomics. In Proceedings of the19th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 07). 29-31 October, Patras, Greece. (pp. 91-95). IEEE Computer Society
Tsiknakis, M.N., Kafetzopoulos, D., Potamias, G.A., Analyti, A., Marias, K., & Sfakianakis, S.G. (2006). Developing a European Biomedical GRID for post-genomic research on Cancer. Proceedings of the IEEE International Topic Conference on Information Technology in Biomedicine (ITAB-2006). 25-28 October, Ioannina, Greece
Sfakianakis, S.G., Chronaki, C., Bernstein, I., Norgaard, J.R., Katehakis, D.G., Potamias, G.A., & Tsiknakis, M.N. (2006). Early experience from HL7 v3 tools, the Pedigree topic, and CDA in the Danish HNPCC Registry. International HL7 Interoperability Conference IHIC. 24-25 August, Cologne, Germany
Chronaki, C., Chiarugi, F., Sfakianakis, S.G., & Zywietz, C. (2005). A web service for conformance testing of ECG records to the SPC-ECG standard. Computers in Cardiology, 2005. September, Lyon, France. (pp. 961-964)
Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). Fundamental components for the realization of a federated integrated electronic health record environment. 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 25 October 2001 through 28 October 2001, Istanbul. (pp. 3646-3649) (04549244)

Papers in Proceedings (abstract reviewed)

Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2002). Integrated Electronic Health Record (in Greek). Proceedings of the 6th FORTH Workshop, Ioannina and Metsovo, Greece, March 1-3, 2002. (pp. 70-71)

Periodicals (13)

Journal Articles

Chronaki, C., Sfakianakis, S.G., Petrakis, Y., Yang, M., Radulescu, M., Eichelberg, M., Erturkmen, G.L., Hinterbuchner, L., Arbelo, E., & Dogac, A. (2011). Integrating Out-Patient and Remote Follow-up of Cardiovascular Implantable Electronic Device Patients. PACE (ICPES2011), 34(11), 1357-8.
Brochhausen, M., Spear, A.D., Cocos, C., Weiler, G., Martin, L., Anguita, A., Stenzhorn, H., Daskalaki, E., Schera, F., Schwarz, U., Sfakianakis, S.G., Kiefer, S., Doerr, M., Graf, N., & Tsiknakis, M.N. (2011). The ACGT Master Ontology and its applications - Towards an ontology-driven cancer research and management system. Journal of Biomedical Informatics, 44(1), 8-25.
Sfakianakis, S.G., Blazadonakis, M.E., Dimou, I.N., Zervakis, M.E., Tsiknakis, M.N., Potamias, G.A., Kafetzopoulos, D., & Lowe, D. (2010). Decision Support Based on Genomics: Integration of Data and Knowledge Driven Reasoning. International Journal of Biomedical Engineering and Technology , 3(3/4), 287-307.
Kanterakis, A., Potamias, G.A., Zacharioudakis, G., Koumakis, L., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: a scenario for the coupling of molecular regulatory pathways and gene-expression profiles. Stud Health Technol Inform, 160, 1304-1308.
Ruping, S., Wegener, D., Sfakianakis, S.G., & Sengstag, T. (2009). Workflows for intelligent monitoring using proxy services. Studies in health technology and informatics, 147, 277-282. Netherlands
Tsiknakis, M.N., Brochhausen, M., Nabrzyski, J., Pucacki, J., Sfakianakis, S.G., Potamias, G.A., Desmedt, C., & Kafetzopoulos, D. (2008). A semantic grid infrastructure enabling integrated access and analysis of multilevel biomedical data in support of postgenomic clinical trials on cancer. IEEE Trans Inf Technol Biomed, 12(2), 205-217.
Katehakis, D.G., Sfakianakis, S.G., Kavlentakis, G., Anthoulakis, D., & Tsiknakis, M.N. (2007). Delivering a Lifelong Integrated Electronic Health Record Based on a Service Oriented Architecture. IEEE Transactions on Information Technology in Biomedicine, 11(6), 639-650.
Tsiknakis, M.N., Rueping, S., Martin, L., Sfakianakis, S.G., Bucur, A., Sengstag, T., Brochhausen, M., & Pucacki, J. (2007). Developing a European Grid infrastructure for cancer research: vision, architecture, and services. eCancerMedicalScience Journal (on line journal), 1, eCancerMedicalScience Journal.
Sfakianakis, S.G., Chronaki, C., Chiarugi, F., Conforti, F., & Katehakis, D.G. (2007). Reflections on the role of open source in health information system interoperability. Yearbook of medical informatics, (pp. 50-60). Germany
Tsiknakis, M.N., Katehakis, D.G., Sfakianakis, S.G., Kavlentakis, G., & Orphanoudakis, S.C. (2005). An Architecture for Regional Health Information Networks Addressing Issues of Modularity and Interoperability. Journal of Telecommunications and Information Technology (JTIT), 4, 26-39.
Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). An Infrastructure for Integrated Electronic Health Record Services: The Role of XML (Extensible Markup Language). , 77, 1074-1079. Gunther Eysenbach; Centre for Global eHealth Innovation, Toronto, Canada.
Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). An infrastructure for integrated electronic health record services: The role of XML (extensible markup language). J.Med.Internet Res., 3(1), 83-91.
Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). An infrastructure for integrated electronic health record services: the role of XML. Technol.Health Care, 8(3-4), 189-190. Amsterdam, The Netherlands, The Netherlands: IOS Press.

Technical & Research Reports (1)

ICS-FORTH Technical Reports

Katehakis, D.G., Sfakianakis, S.G., Anthoulakis, D., Kavlentakis, G., Tzelepis., Th.Z., Orphanoudakis, S.C., & Tsiknakis, M.N. (2005). A Holistic Approach for the Delivery of the Integrated Electronic Health Record within a Regional Health Information Network. 2005.TR350_Holistic_Approach_Delivery_Integrated_Electronic_Health_Record.pdf