ICS Publications - CBML

Conferences (15)

    Papers in Proceedings (full-paper reviewed)

  1. Koumakis, L., Giannoulis, M., Kondylakis, H., Kanterakis, A., & Potamias, G.A. (2017). Calchas: A Semantic Search Engine for Bioinformatics Resources. Hellenic Bioinformatics, Heraklion, Greece, 6-9 September 2017.
  2. Potamias, G.A., Lakiotaki, K., Kartsaki, E., Kanterakis, A., Katsila, T., & Patrinos, GP. (2016). Enabling pharmacogenomic services: Informatics and computational discovery aspects. International Conference on Bioinformatics and Bioengineering (BIBE), IEEE 15th, 2-4 Nov. 2015, Belgrade, Serbia, 4 January 2016. (electronic ISBN: 978-1-4673-7983-0 , http://ieeexplore.ieee.org/abstract/document/7367630/), doi: 10.1109/BIBE.2015.7367630.
  3. Koumakis, L., Kanterakis, A., Potamias, G.A., Sfakianakis, S.G., Zacharioudakis, G., & Tsiknakis, M.N. (2010). Analyzing gene regulatory networks and gene expression profiles via scientific workflows. International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery, Chania, Greece, 7-9 July 2010.
  4. Kanterakis, A., Zacharioudakis, G., Koumakis, L., Potamias, G.A., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: A scenario for the coupling of molecular regulatory pathways and gene-expression profiles. 13th International Congress on Medical Informatics (MEDINFO 2010), South Africa, 12 - 15 of September 2010.
  5. Tsiknakis, M.N., Sfakianakis, S.G., Zacharioudakis, G., Koumakis, L., Kanterakis, A., Potamias, G.A., & Kafetzopoulos, D. (2009). A semantically aware platform for the authoring and secure enactment of bioinformatics workflows. 31st Annual International IEEE EMBS Conference (EMBC2009). September, 2-6, 2009, Hilton Minneapolis, Minnesota, USA.
  6. Kanterakis, A., Moustakis, V.A., Kafetzopoulos, D., & Potamias, G.A. (2009). Revealing Disease Mechanisms via Coupling Molecular Pathways Scaffolds and Microarrays: A Study on the Wilms Tumor Disease. Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications {&} Innovations (AIAI-2009), Thessaloniki, Greece, April 23-25 (pp. 88-99).
  7. Christodoulou, E., Ioannou, M., Kafousi, M., Sanidas, E., Papagiannakis, G., Danilatou, V., Tsiliki, G., Margaritis, Th., Kondylakis, H., Manakanatas, D., Koumakis, L., Kanterakis, A., Vassilaros, S., Tsiknakis, M.N., Analyti, A., Potamias, G.A., Tsiftsis, D., Stathopoulos, E., & Kafetzopoulos, D. (2008). A new gene expression signature related to breast cancer estrogen receptor statusBIBE 2008. 8th IEEE International Conference on BioInformatics and BioEngineering, Greece, October (pp. 1-7). (pdf).
  8. Kanterakis, A., Kafetzopoulos, D., Moustakis, V.A., & Potamias, G.A. (2008). Mining gene expression profiles and gene regulatory networks: Identification of phenotype-specific molecular mechanisms. 5th Hellenic Conference on Artificial Intelligence, SETN 2008, Syros, 2 October 2008 through 4 October 2008 (vol. 5138 LNAI, pp. 97-109). (03029743; 3540878807 (ISBN); 9783540878803 (ISBN)).
  9. Potamias, G.A., Koumakis, L., Kanterakis, A., Sfakianakis, S.G., Analyti, A., Moustakis, V.A., Kafetzopoulos, D., Ruping, S., & Tsiknakis, M.N. (2007). Knowledge Discovery Scientific Workflows in Clinico-GenomicsIn Proceedings of the19th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 07), Patras, Greece, 29-31 October (pp. 91-95). IEEE Computer Society.
  10. Antonakaki, D., Kanterakis, A., & Potamias, G.A. (2006). Biomedical literature mining for text classification and construction of gene networks. Advances in Artificial Intelligence. 4th Helenic Conference 4th Helenic Conference on AI, SETN 2006, Heraklion, Crete, 18 May 2006 through 20 May 2006 (vol. 3955 LNAI, pp. 469-473). (03029743; 354034117X (ISBN); 9783540341178 (ISBN)).
  11. Potamias, G.A., & Kanterakis, A. (2006). DNA promoter prediction via feature selection: The MineProm system. Thessaloniki, Greece, September 6 (pp. 110-120).
  12. Kanterakis, A., & Potamias, G.A. (2006). Supporting clinico-genomic knowledge discovery: A multi-strategy data mining process. 4th Helenic Conference on AI, SETN 2006, Heraklion, Crete, 18 May 2006 through 20 May 2006 (vol. 3955 LNAI, pp. 520-524). (03029743; 354034117X (ISBN); 9783540341178 (ISBN)).
      Poster presentations (abstract reviewed)

    1. Kanterakis, A., Kartsaki, E., & Potamias, G.A. (2016). MutationInfo: Retrieve genomic positions from HGVS variants. European Human Genetics Conference - ESHG 2016, May 21 – 24, 2016. Barcelona, Spain.
    2. Potamias, G.A., Koumakis, L., Kanterakis, A., & Moustakis, V.A. (2010). Towards the Discovery of Reliable Biomarkers from Gene-Expression Profiles: An Iterative Constraint Satisfaction Learning Approach. Artificial Intelligence: Theories, Models and Applications, 6th Hellenic Conference on AI, SETN 2010, Athens, Greece, 4-7 May (vol. 6040, pp. 233-242). Springer (978-3-642-12841-7).
    3. Potamias, G.A., Tsiknakis, M.N., Papoutsidis, V., Kanterakis, A., Marias, K., & Kafetzopoulos, D. (2006). Advancing Clinico-Genomic Research Trials via Integrated Knowledge Discovery Operations. Informatics in Europe (MIE 2006), Maastricht, the Netherlands, August 27-30.

              Periodicals (8)

                Journal Articles

              1. Lakiotaki, K., Kanterakis, A., Kartsaki, E., Katsila, T., Patrinos, GP., & Potamias, G.A. (2017). Exploring public genomics data for population pharmacogenomics. PLoS One12(8), e0182138, Public Library of Science (http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0182138), doi: https://doi.org/10.1371/journal.pone.0182138.
              2. Lakiotaki, K., Kartsaki, E., Kanterakis, A., Katsila, T., Patrinos, GP., & Potamias, G.A. (2016). ePGA: A Web-Based Information System for Translational Pharmacogenomics. PLoS One11(9), e0162801, Public Library of Science (http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0162801), doi: https://doi.org/10.1371/journal.pone.016280.
              3. Koumakis, L., Kanterakis, A., Kartsaki, E., Chatzimina, M., Zervakis, M.E., Tsiknakis, M.N., Vassou, D., Kafetzopoulos, D., Marias, K., Moustakis, V.A., & Potamias, G.A. (2016). MinePath: mining for phenotype differential sub-paths in molecular pathways. PLoS computational biologye1005187, Public Library of Science doi: https://doi.org/10.1371/journal.pcbi.1005187 .
              4. Kanterakis, A., Kuiper, J., Potamias, G.A., & Swertz, M.A. (2015). PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols. Source Code for Biology and Medicine10(1), 1-14, Springer Nature (https://scfbm.biomedcentral.com/articles/10.1186/s13029-015-0042-6), doi: https://doi.org/10.1186/s13029-015-0042-6.
              5. Kanterakis, A., Potamias, G.A., Zacharioudakis, G., Koumakis, L., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: a scenario for the coupling of molecular regulatory pathways and gene-expression profiles. Stud Health Technol Inform160, 1304-1308.
              6. Potamias, G.A., & Kanterakis, A. (2007). Feature selection for the promoter recognition and prediction problem. Int.J.Data Warehouse.Min.3(3), 60-78, (15483924).
              7. Potamias, G.A., Koumakis, L., Kanterakis, A., Moustakis, V.A., Kafetzopoulos, D., & Tsiknakis, M.N. (2007). Mining interesting clinico-genomic associations: The HealthObs approach. Artificial Intelligence and Innovations 2007: from Theory to Applications, IFIP International Federation for Information Processing247, 137-145, (15715736; 0387741607 (ISBN); 9780387741604 (ISBN)).
              8. Koumakis, L., Moustakis, V.A., Kanterakis, A., & Potamias, G.A. (2006). Mining time series with mine time. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)3955 LNAI, 158-168, (03029743; 354034117X (ISBN); 9783540341178 (ISBN)).
                              Found: 23 publications
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